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SCNpilot_expt_500_bf_scaffold_1386_22

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 50 / 55 BSCG 47 / 51 ASCG 11 / 38 MC: 1
Location: 21593..22078

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Sphingomonas elodea RepID=UPI00026310BC similarity UNIREF
DB: UNIREF100
  • Identity: 93.8
  • Coverage: 161.0
  • Bit_score: 298
  • Evalue 3.70e-78
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493, ECO:0000313|EMBL:AJP71642.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.8
  • Coverage: 161.0
  • Bit_score: 300
  • Evalue 1.30e-78
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 70.8
  • Coverage: 161.0
  • Bit_score: 239
  • Evalue 8.30e-61

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Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 486
ATGGCCGAAAAGCAGACCTCGCTTCAGGATCTCTTCCTCAACTCGCTGCGCCGGTCGAAGACGCCGGTCACGATGTTCCTCGTCAAGGGCGTCAAGCTCCAGGGCATCGTTACCTGGTTCGACAATTTTTCGGTGCTGCTCCGCCGCGACGGCCAGTCGCAGCTCATCTACAAGCACGCGATCTCCACGATCATGCCATCGGGCCCGGTGGACCTTGCCCCGCTTCTCGAAGCGGTGGGAGAATTCCAGTCCAAGAACCCGGTATTGCAGGAGATTTTCCTGAATGCGGTTCGCCGCCAGCAGGAAAATGTCACGATGTTCCTGGTCAATGGCGTGATGCTCCAGGGCCAGATCGCGGCCTTTGACCTGTTCTGCATGCTGCTCCAGCGCGAGGGCATGGCCCAGCTGGTCTACAAGCATGCCGTCTCGACGATCCAGCCGGCGCACCCGCTGAACCTCGCCGAGGAACAGAATAGCGACGACTGA
PROTEIN sequence
Length: 162
MAEKQTSLQDLFLNSLRRSKTPVTMFLVKGVKLQGIVTWFDNFSVLLRRDGQSQLIYKHAISTIMPSGPVDLAPLLEAVGEFQSKNPVLQEIFLNAVRRQQENVTMFLVNGVMLQGQIAAFDLFCMLLQREGMAQLVYKHAVSTIQPAHPLNLAEEQNSDD*