name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_500_bf_scaffold_1386_1
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
253..2091
|
aspartyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035D515A
rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
|
|
SCNpilot_expt_500_bf_scaffold_1386_2
unknown
|
Not on your lists |
2098..2805
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_1386_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3000..4280
|
L-serine dehydratase 1 n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S210_9SPHN
rbh
L-serine dehydratase 1
rbh
L-serine dehydratase 1 {ECO:0000313|EMBL:AGH50035.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
|
|
SCNpilot_expt_500_bf_scaffold_1386_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4405..5421
|
D-lactate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F58B07
rbh
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ABZ70488.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
|
|
SCNpilot_expt_500_bf_scaffold_1386_5
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5506..6879
|
Beta-lactamase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ19_9SPHN
Beta-lactamase {ECO:0000313|EMBL:KFE68944.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
beta-lactamase
|
|
SCNpilot_expt_500_bf_scaffold_1386_6
unknown
|
Not on your lists |
6882..7406
|
This feature has no annotations |
|
SCNpilot_expt_500_bf_scaffold_1386_7
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7420..8046)
|
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003661820
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
|
|
SCNpilot_expt_500_bf_scaffold_1386_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8149..8925
|
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631AB7
rbh
Polyphosphate kinase {ECO:0000313|EMBL:AJP71632.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria
|
Not on your lists |
8982..9656
|
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000382CE60
Ankyrin {ECO:0000313|EMBL:EEF57620.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
|
|
SCNpilot_expt_500_bf_scaffold_1386_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9685..10314)
|
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
carbonate dehydratase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDA0
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_11
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10392..11366
|
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
radical SAM protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631732
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11410..11916
|
cyclase n=1 Tax=Sphingomonas elodea RepID=UPI0002631731
Cyclase {ECO:0000313|EMBL:AJP71635.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative oligoketide cyclase
|
|
SCNpilot_expt_500_bf_scaffold_1386_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11938..12342)
|
competence protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F65694
Competence protein {ECO:0000313|EMBL:AJP71636.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
CinA domain-containing protein
|
|
SCNpilot_expt_500_bf_scaffold_1386_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12482..13606)
|
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein (EC:4.6.1.12)
rbh
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F22422
rbh
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
|
|
SCNpilot_expt_500_bf_scaffold_1386_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13852..14850
|
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621, ECO:0000313|EMBL:AJP71638.1}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tRNA-dihydrouridine synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031DF82D
rbh
dihydrouridine synthase TIM-barrel protein nifR3
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15340..15867
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP71639.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nitrogen-specific signal transduction histidine kinase NtrB (EC:2.7.3.-); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
histidine kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D670F6
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_17
GWC1_Azotobacter_66_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15783..16496)
|
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JQK1_BURP1
hypothetical protein
Tax=GWC1_Azotobacter_66_9_curated
|
|
SCNpilot_expt_500_bf_scaffold_1386_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16752..17249
|
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E139D3
Chemotaxis protein CheY {ECO:0000313|EMBL:AJP71640.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Fis family nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
|
|
SCNpilot_expt_500_bf_scaffold_1386_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17310..19535
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ATPase n=1 Tax=Sphingomonas elodea RepID=UPI00026310BA
rbh
multi-sensor signal transduction histidine kinase
|
|
SCNpilot_expt_500_bf_scaffold_1386_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19532..20911
|
ATPase AAA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030AABC3
rbh
ATPase AAA {ECO:0000313|EMBL:AJP71641.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
two component sigma-54 specific Fis family transcriptional regulator
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20975..21292)
|
membrane protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BD8E
Cation/cationic drug transporter {ECO:0000313|EMBL:KEZ20830.1}; Multidrug transporter {ECO:0000313|EMBL:KFD25895.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
|
|
SCNpilot_expt_500_bf_scaffold_1386_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21593..22078
|
RNA-binding protein Hfq n=1 Tax=Sphingomonas elodea RepID=UPI00026310BC
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493, ECO:0000313|EMBL:AJP71642.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
|
|
SCNpilot_expt_500_bf_scaffold_1386_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22091..23380
|
GTPase HflX n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E7CB94
rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900, ECO:0000313|EMBL:AJP71643.1}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HSR1-like GTP-binding protein
|
|
SCNpilot_expt_500_bf_scaffold_1386_24
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23385..23681)
|
YCII-related domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ENL5_9BURK
YCII-related domain-containing protein {ECO:0000313|EMBL:EJE53769.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1386_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23681..24442)
|
Nucleoside triphosphate hydrolase {ECO:0000313|EMBL:AJP71644.1}; EC=3.6.1.19 {ECO:0000313|EMBL:AJP71644.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nucleotide pyrophosphohydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F7FF1
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24539..25420)
|
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003764C44
rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA08101.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
|
|
SCNpilot_expt_500_bf_scaffold_1386_27
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25608..26144
|
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000365AC71
Uncharacterized protein {ECO:0000313|EMBL:AJA08100.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
|
|
SCNpilot_expt_500_bf_scaffold_1386_28
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26183..27088
|
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003671CA8
rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA08099.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transcriptional regulator
|
|
SCNpilot_expt_500_bf_scaffold_1386_29
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27182..30175
|
TonB-dependent receptor, partial n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3AF
rbh
TonB-dependent receptor {ECO:0000313|EMBL:AJA08098.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TonB dependent receptor for iron chelates
rbh
|
|
SCNpilot_expt_500_bf_scaffold_1386_30
unknown
|
Not on your lists |
comp(30326..30493)
|
This feature has no annotations |