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SCNpilot_expt_500_bf_scaffold_1386

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1386_1
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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253..2091
DNA (1839bp) protein (613aa)
aspS; aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] rbh
aspartyl-tRNA synthetase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035D515A rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_500_bf_scaffold_1386_2
unknown

Not on your lists

2098..2805
DNA (708bp) protein (236aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1386_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3000..4280
DNA (1281bp) protein (427aa)
L-serine dehydratase 1 n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S210_9SPHN rbh
L-serine dehydratase 1 rbh
L-serine dehydratase 1 {ECO:0000313|EMBL:AGH50035.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_500_bf_scaffold_1386_4
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4405..5421
DNA (1017bp) protein (339aa)
D-isomer specific 2-hydroxyacid dehydrogenase; K03778 D-lactate dehydrogenase [EC:1.1.1.28] rbh
D-lactate dehydrogenase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F58B07 rbh
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding {ECO:0000313|EMBL:ABZ70488.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_500_bf_scaffold_1386_5
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5506..6879
DNA (1374bp) protein (458aa)
Beta-lactamase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WZ19_9SPHN
Beta-lactamase {ECO:0000313|EMBL:KFE68944.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
beta-lactamase
SCNpilot_expt_500_bf_scaffold_1386_6
unknown

Not on your lists

6882..7406
DNA (525bp) protein (175aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1386_7
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7420..8046)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003661820
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
SCNpilot_expt_500_bf_scaffold_1386_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8149..8925
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631AB7 rbh
Polyphosphate kinase {ECO:0000313|EMBL:AJP71632.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_expt_500_bf_scaffold_1386_9
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

8982..9656
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000382CE60
Ankyrin {ECO:0000313|EMBL:EEF57620.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCNpilot_expt_500_bf_scaffold_1386_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9685..10314)
DNA (630bp) protein (210aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1]
carbonate dehydratase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDA0 rbh
SCNpilot_expt_500_bf_scaffold_1386_11
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10392..11366
DNA (975bp) protein (325aa)
lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] rbh
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
radical SAM protein n=1 Tax=Sphingomonas elodea RepID=UPI0002631732 rbh
SCNpilot_expt_500_bf_scaffold_1386_12
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11410..11916
DNA (507bp) protein (169aa)
cyclase n=1 Tax=Sphingomonas elodea RepID=UPI0002631731
Cyclase {ECO:0000313|EMBL:AJP71635.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
putative oligoketide cyclase
SCNpilot_expt_500_bf_scaffold_1386_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11938..12342)
DNA (405bp) protein (135aa)
competence protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F65694
Competence protein {ECO:0000313|EMBL:AJP71636.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
CinA domain-containing protein
SCNpilot_expt_500_bf_scaffold_1386_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12482..13606)
DNA (1125bp) protein (375aa)
ispDF; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein (EC:4.6.1.12) rbh
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F22422 rbh
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_1386_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13852..14850
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621, ECO:0000313|EMBL:AJP71638.1}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
tRNA-dihydrouridine synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031DF82D rbh
dihydrouridine synthase TIM-barrel protein nifR3 rbh
SCNpilot_expt_500_bf_scaffold_1386_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15340..15867
DNA (528bp) protein (176aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:AJP71639.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
nitrogen-specific signal transduction histidine kinase NtrB (EC:2.7.3.-); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3]
histidine kinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002D670F6 rbh
SCNpilot_expt_500_bf_scaffold_1386_17
GWC1_Azotobacter_66_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15783..16496)
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Burkholderia pseudomallei (strain 1710b) RepID=Q3JQK1_BURP1
hypothetical protein
Tax=GWC1_Azotobacter_66_9_curated
SCNpilot_expt_500_bf_scaffold_1386_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16752..17249
DNA (498bp) protein (166aa)
chemotaxis protein CheY n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E139D3
Chemotaxis protein CheY {ECO:0000313|EMBL:AJP71640.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Fis family nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
SCNpilot_expt_500_bf_scaffold_1386_19
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17310..19535
DNA (2226bp) protein (742aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ATPase n=1 Tax=Sphingomonas elodea RepID=UPI00026310BA rbh
multi-sensor signal transduction histidine kinase
SCNpilot_expt_500_bf_scaffold_1386_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19532..20911
DNA (1380bp) protein (460aa)
ATPase AAA n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030AABC3 rbh
ATPase AAA {ECO:0000313|EMBL:AJP71641.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
two component sigma-54 specific Fis family transcriptional regulator rbh
SCNpilot_expt_500_bf_scaffold_1386_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20975..21292)
DNA (318bp) protein (106aa)
membrane protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BD8E
Cation/cationic drug transporter {ECO:0000313|EMBL:KEZ20830.1}; Multidrug transporter {ECO:0000313|EMBL:KFD25895.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
small multidrug resistance protein; K11741 quaternary ammonium compound-resistance protein SugE
SCNpilot_expt_500_bf_scaffold_1386_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21593..22078
DNA (486bp) protein (162aa)
RNA-binding protein Hfq n=1 Tax=Sphingomonas elodea RepID=UPI00026310BC
RNA-binding protein Hfq {ECO:0000256|SAAS:SAAS00067493, ECO:0000313|EMBL:AJP71642.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hfq; RNA-binding protein Hfq; K03666 host factor-I protein
SCNpilot_expt_500_bf_scaffold_1386_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22091..23380
DNA (1290bp) protein (430aa)
GTPase HflX n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002E7CB94 rbh
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900, ECO:0000313|EMBL:AJP71643.1}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HSR1-like GTP-binding protein
SCNpilot_expt_500_bf_scaffold_1386_24
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23385..23681)
DNA (297bp) protein (99aa)
YCII-related domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ENL5_9BURK
YCII-related domain-containing protein {ECO:0000313|EMBL:EJE53769.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1386_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23681..24442)
DNA (762bp) protein (254aa)
Nucleoside triphosphate hydrolase {ECO:0000313|EMBL:AJP71644.1}; EC=3.6.1.19 {ECO:0000313|EMBL:AJP71644.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MazG family protein; K04765 ATP diphosphatase [EC:3.6.1.8] rbh
nucleotide pyrophosphohydrolase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030F7FF1 rbh
SCNpilot_expt_500_bf_scaffold_1386_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24539..25420)
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003764C44 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA08101.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_1386_27
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25608..26144
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000365AC71
Uncharacterized protein {ECO:0000313|EMBL:AJA08100.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_500_bf_scaffold_1386_28
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26183..27088
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003671CA8 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA08099.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
transcriptional regulator
SCNpilot_expt_500_bf_scaffold_1386_29
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27182..30175
DNA (2994bp) protein (998aa)
TonB-dependent receptor, partial n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3AF rbh
TonB-dependent receptor {ECO:0000313|EMBL:AJA08098.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
TonB dependent receptor for iron chelates rbh
SCNpilot_expt_500_bf_scaffold_1386_30
unknown

Not on your lists

comp(30326..30493)
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

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