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SCNpilot_expt_500_bf_scaffold_4187_4

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_66_39

near complete RP 50 / 55 BSCG 47 / 51 ASCG 11 / 38 MC: 1
Location: 2045..3646

Top 3 Functional Annotations

Value Algorithm Source
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000300C1FF similarity UNIREF
DB: UNIREF100
  • Identity: 67.6
  • Coverage: 534.0
  • Bit_score: 671
  • Evalue 6.80e-190
  • rbh
Membrane protein {ECO:0000313|EMBL:AJP71520.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.4
  • Coverage: 534.0
  • Bit_score: 665
  • Evalue 6.90e-188
outer membrane channel protein TolC; K12340 outer membrane channel protein similarity KEGG
DB: KEGG
  • Identity: 57.1
  • Coverage: 459.0
  • Bit_score: 482
  • Evalue 2.40e-133

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Taxonomy

Sphingomonas sp. WHSC-8 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1602
ATGCGAATTTCCTCTCTGTTTCTGGGCGCCAGCCTTGTCGCGATCGCCGTGCCTGCCGCTGCGCAGACCACGACGACGCGTGCCGGCACCGACACTCCCGTGCAGGGGGTGGGCACCGGCGCACCGGGCCAGACCGCGCAGCCGACCACCACGCTGCGCGACGCGCTGGTGCTTGCCTACAACACCAATCCGGGCCTTCAATCGGAGCGCGCCAACCAGCGCGCCAATGACGAGAACGTGCCGATCGCCAGGGCCGCCGGCCGTCCCGGCGTGAACGGCACGGGTTCGCTGAGCGACAGCATCTATAATAGCGACGCGCTTGCCGGCCCGCTTGCCGGCCCGACTCGGACCGCTCGCCTGGGCCTCAATCTTTCGGTGCCGATCTATTCGGGCGGCGGAGTGCGCAATTCGGTTCGTGCGGCGGAGACTCGCGTCGATGCTGGCCATGCCAGCCTGCGTGGTATCGAAGCGCAGCTCTTCACCGATGCGGTGACCGCCTATGTCGACGTGCTGCGCTTCGAGGCGATCGTCCGCCTCAACCAGCAGAACGTCCATGTTCTCGAGGTCAACCTCCAGGCGACCCGCGATCGGTTCGAAGTGGGCGATCTCACGCGCACCGACGTCGCGCAGTCCGAAGCGCGTCTCGCGCTCGCCCAGAGTCAGCTGCGCACTGCCGAGGCCGGGCTGATCGGTTCGCGCGAGAATTACATCCGCGTCGTCGGCGCCCCCCCGGGCGTGCTCGCGCAGCCGCCGGCGCTGCCGAATCTGCCTGGCGACGTGCAGGATGCGGAACAGGCCGCGATCAGCAACAATCCCAATCTCGAGGCGGCGCAGAAGCAGCGCGACGCGACTGCGTTCGACGTGAAGGCAGCCAGGGCCAGTCGTTCGCCGCAGGTCTCGCTGACCGCCGGCTCCAGCTACTATAATTACCTGGGCTCGCTCAGCGAAGAAGCGCGTACGCTGGGCGGCCAGAACCCCAACGGCATCTCGAACACCATCGGCGCGCAGTTGACGCTGCCGGTCTTCCAGGGCGGGCTTCCGGCGGCGCAGGTTCGCCAGGCCCAGGCGCGCCGGGCCTCGGCGCTGGAGACGGTGACGCTCACCGAGCGCGGCGTGATCGCCCAGGTGCGCTCCGCCTATGCCAACTACCAGTCGGCGTTGCGCGTGATCGAATCGTCGCGGGTCGCCGTGGATGCCAACAAGCTGAGCCTGGAAGGCGTCCGCGCCGAGAACAGCGTCGGCACCCGTACGATCCTCGACATCCTGAACGCCGAGCAGGAACTGCTGACCAGCCAGGTCAATTACGTCACCGCCGAGCGCGACGCCTATGTCGCCGGCTTCACGCTGCTGGCGGCGATGGGCCGGGCCGAGGCACGCGATCTTAACCTTGACGGCGGGCCGCTCTACGATCCGGACGTCAACTACAAGCGCGTGAAGAATCGCTGGTCGGATCGCAACGACGATCCCGAACCGCAGCCGGTGGGCACCCGCACCAACCAGACTCCCGCGCAGACGCCGGCCGTCACCACCACCTCGCTCGATCCCGTGCTTCAGCGCGGCGATGCGACGCGGCCTGTTGACATTAACCGTAAAAATCCCTGA
PROTEIN sequence
Length: 534
MRISSLFLGASLVAIAVPAAAQTTTTRAGTDTPVQGVGTGAPGQTAQPTTTLRDALVLAYNTNPGLQSERANQRANDENVPIARAAGRPGVNGTGSLSDSIYNSDALAGPLAGPTRTARLGLNLSVPIYSGGGVRNSVRAAETRVDAGHASLRGIEAQLFTDAVTAYVDVLRFEAIVRLNQQNVHVLEVNLQATRDRFEVGDLTRTDVAQSEARLALAQSQLRTAEAGLIGSRENYIRVVGAPPGVLAQPPALPNLPGDVQDAEQAAISNNPNLEAAQKQRDATAFDVKAARASRSPQVSLTAGSSYYNYLGSLSEEARTLGGQNPNGISNTIGAQLTLPVFQGGLPAAQVRQAQARRASALETVTLTERGVIAQVRSAYANYQSALRVIESSRVAVDANKLSLEGVRAENSVGTRTILDILNAEQELLTSQVNYVTAERDAYVAGFTLLAAMGRAEARDLNLDGGPLYDPDVNYKRVKNRWSDRNDDPEPQPVGTRTNQTPAQTPAVTTTSLDPVLQRGDATRPVDINRKNP*