ggKbase home page

SCNpilot_expt_500_bf_scaffold_3548_2

Organism: SCNPILOT_EXPT_750_P_Alphaproteobacteria_novel_39_47

near complete RP 46 / 55 MC: 1 BSCG 47 / 51 MC: 4 ASCG 10 / 38 MC: 2
Location: 1410..2396

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.4
  • Coverage: 325.0
  • Bit_score: 559
  • Evalue 2.50e-156
mraW; S-adenosyl-dependent methyltransferase; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] similarity KEGG
DB: KEGG
  • Identity: 59.4
  • Coverage: 315.0
  • Bit_score: 366
  • Evalue 7.00e-99
  • rbh
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8M4_AZOL4 similarity UNIREF
DB: UNIREF100
  • Identity: 59.4
  • Coverage: 315.0
  • Bit_score: 366
  • Evalue 2.20e-98
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 987
ATGTCGTCGATGACTTTGTCTTCTCAATCTCCCCCAAATTTGCACTTTCCTGTCATGCTTAATGAAGTCCTTTCCTCTCTTTGTCCCCATGATGAGGGGGTTTATGTTGATGGAACTTTTGGTGTTGGAGGGTATTCGCGCGCCATCCTACAACAGGCTTCCTGTACAGTTTATGGGATTGATCGGGATCCACAAGCCGTCAAGCTTGGTCAGGCTTTAGAGCAGAAAGATTCGCATTTTAAAATGATTCATGGGCGTTTTAGTCAAATGAAAGAGCTGCTTGAAGCCCGCGGTGTTAAGATGGTTGATGGGATTGCCTTGGACCTTGGTGTTTCTTCTCCTCAACTGGATCAAAAGGAGAGAGGCTTTTCTTTTCGTTTTGACGGGCCACTAGATATGCGAATGGGCCAAGAAGGGCCGACGGCTGCAGATGTTGTTAATCAGTATTCCGAGGCACAATTAAGCGATATCATCTTTAATTATGGTGAAGAAAGATATGCGCGGCGGATTGCGCGGGCTATCGTAAAAACGCGTGCCGAAGAAATGATCAATACAACTTTACGGTTGGCAGATATTGTTCGTTCTGTTGTGCCTAAAAGCCGCGATGGGATTGATCCTGCAACCCGTACTTTTCAAGGACTTAGAATTTATATAAATCGTGAACTTGAAGAGCTTTCAGAAGGTTTGGAAGCCGCAGAAGCTCTTCTTGCGCCTGGCGGGCGTTTAGTGGTGGTCAGCTTTCATTCGCTTGAAGACCGGATGGTCAAAGATTTTTTTAGAAAGAAGTCCCAAGCCCCTAAGCACGTGTCTCGTCACCTGCCAATGTTGCCAACATTTAGCCATTCAACGTTAAAAGTATTAACAGCAAAACCTCTGCAAGCCACAGCAGAAGAGGTCAGCACCAATCCTCGCTCACGCTCAGCAAAATTAAGAGTGGCTGAGAAATTAGAAAATGCGTCACAAGAACAAGGAGAACTTCCAATATGA
PROTEIN sequence
Length: 329
MSSMTLSSQSPPNLHFPVMLNEVLSSLCPHDEGVYVDGTFGVGGYSRAILQQASCTVYGIDRDPQAVKLGQALEQKDSHFKMIHGRFSQMKELLEARGVKMVDGIALDLGVSSPQLDQKERGFSFRFDGPLDMRMGQEGPTAADVVNQYSEAQLSDIIFNYGEERYARRIARAIVKTRAEEMINTTLRLADIVRSVVPKSRDGIDPATRTFQGLRIYINRELEELSEGLEAAEALLAPGGRLVVVSFHSLEDRMVKDFFRKKSQAPKHVSRHLPMLPTFSHSTLKVLTAKPLQATAEEVSTNPRSRSAKLRVAEKLENASQEQGELPI*