ggKbase home page

SCNpilot_expt_500_bf_scaffold_3837_9

Organism: SCNPILOT_EXPT_750_P_Alphaproteobacteria_novel_39_47

near complete RP 46 / 55 MC: 1 BSCG 47 / 51 MC: 4 ASCG 10 / 38 MC: 2
Location: comp(4576..5109)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L6 n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8R1_AZOL4 similarity UNIREF
DB: UNIREF100
  • Identity: 64.4
  • Coverage: 177.0
  • Bit_score: 250
  • Evalue 9.60e-64
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.4
  • Coverage: 177.0
  • Bit_score: 341
  • Evalue 7.60e-91
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 similarity KEGG
DB: KEGG
  • Identity: 65.0
  • Coverage: 177.0
  • Bit_score: 250
  • Evalue 3.00e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 534
ATGTCGCGTGTAGGAAAAAATCCAGTTGTGATCCCTCAAGGGGTTGAGTGCCAAGTTTCTGGCGCAATGCTGACTGTTAAGGGTAAAGTAGGGCAATTAAGCATGCCTATTTCTTCTGATGTTATTACAAAAGTTGAAGATGGCAAAGTTGTTGTTAAGCCTGCTTCTCAGAGCAAACAATCACGTATGATGTGGGGAACAACGCGCAAGCTTGTTGATAATATTATTATTGGTGTTTCTCAAGGATTTACACGAAATCTTGAAATTAACGGTGTTGGTTACCGTGCAGCTGTTCAAGGGAAAAACCTTGTTTTGCAATTAGGCTACAGTCATGATATTGAATATCCAATTCCTGATGATGTTCAAATCAAATGTGAAAAGCCAACGGCAATTTCTATTTTTGGAGCAAGTCGTCAGCGAGTTGGGCAGATTGCCGCAGAAATTCGTAACTATCGTGGTCCTGAGCCTTATAAAGGTAAGGGAATTAAATATGAGAATGAATTCATTCTCCGCAAAGAAGGTAAGAAGAAGTAA
PROTEIN sequence
Length: 178
MSRVGKNPVVIPQGVECQVSGAMLTVKGKVGQLSMPISSDVITKVEDGKVVVKPASQSKQSRMMWGTTRKLVDNIIIGVSQGFTRNLEINGVGYRAAVQGKNLVLQLGYSHDIEYPIPDDVQIKCEKPTAISIFGASRQRVGQIAAEIRNYRGPEPYKGKGIKYENEFILRKEGKKK*