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SCNpilot_expt_500_bf_scaffold_3979_15

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 33 / 55 BSCG 33 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 11008..11592

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C161 similarity UNIREF
DB: UNIREF100
  • Identity: 53.6
  • Coverage: 192.0
  • Bit_score: 195
  • Evalue 6.80e-47
RND transporter {ECO:0000313|EMBL:KFD27701.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.6
  • Coverage: 192.0
  • Bit_score: 195
  • Evalue 9.60e-47
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 52.4
  • Coverage: 189.0
  • Bit_score: 186
  • Evalue 5.90e-45

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Taxonomy

Sphingobium yanoikuyae → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
GTGGTGGCTGTCGCGCTGCGCCCGGATCAGGTGCGTGCGCTGCGGCTGGAACTGGCGGTCGCGGAGGCGGCGGCGAGCGTTCCCGTCGCGGTTCTCCCCGCGCGGATCGTCCCGCCGCCCAATGCGCGCGTCGCGGTCGCCGCGCAGCTTGCCGGCGTCGTCACGCGGGTGTTCGTGGTCGACGGGCAGGAGGTGCGCGCCGGCCAGCCGCTCGCCGCCGTCGCCAGCCGCGACATGGTGGGCCTCAACGCCGATCTGGCGCGCGCCCGGTCGCGCCAGGCGGTCGCGCGCGCCGATGCGGCGCGGCTGGCGCAGCTTTCCCGCGAGGGCATCATCGCCCCGGCCCGCGCCGATCAGGCCAGGGCGCTGGCGCGGCAGAGCGACGTGGATGTCGGCGAGCAGGCGCGGCTGATCGCGCTCGCGGGCGGCGCGCATGGCGGCGGCGCGGGCTATACGCTCGTCGCGCCGATCGCCGGCCGGGTCAGCAGCATGACCGCCGAGACCGGCAAGGCGCTCGACGTCGGCGCCGCGCCCTTCGTGATCGACGGCGGCGGCGCGTTGCAGGTGACGGCGCAGCTCCCCGAG
PROTEIN sequence
Length: 195
VVAVALRPDQVRALRLELAVAEAAASVPVAVLPARIVPPPNARVAVAAQLAGVVTRVFVVDGQEVRAGQPLAAVASRDMVGLNADLARARSRQAVARADAARLAQLSREGIIAPARADQARALARQSDVDVGEQARLIALAGGAHGGGAGYTLVAPIAGRVSSMTAETGKALDVGAAPFVIDGGGALQVTAQLPE