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SCNpilot_expt_500_bf_scaffold_5202_14

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 33 / 55 BSCG 33 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 11719..12258

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Sphingobium sp. AP49 RepID=J2DDT2_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 76.0
  • Coverage: 179.0
  • Bit_score: 272
  • Evalue 4.10e-70
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJK80937.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.0
  • Coverage: 179.0
  • Bit_score: 272
  • Evalue 5.70e-70
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 51.9
  • Coverage: 183.0
  • Bit_score: 161
  • Evalue 1.90e-37

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Taxonomy

Sphingobium sp. AP49 → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 540
ATGCGGGCGAACGAGGACGAGTTGCGCCGGTTGATGATCAGCGGGCTCGACGGCAATGCCGCCGACCACGCCGCATTGTTGCGCCTGCTCGTGCCCGTGCTGCGCGGCTTCTACCGGCGGCGCTCCAGCGGCGCGGACGACGATATCGAGGATCTGGTGCAGGAGACGTTGATTGCGGTGCACACCCGCCGCGCAAGCTACGATCGCGAGCGCGCCTTCACCGCATGGCTGTTCGCGGTGGCGCGTTACAAGATGATCGACCATTTCCGCCGCGTCCGCCGCCTCCAGCCGATCGAGGGGCTGGAAGAGGTACTGGTCGCCGACGGGTTCGAGGACGCATCCGGCGCGCGGCTGGACGTGGAGGAACTGCTCGGCACGCTCCCGCCAAAGCAGGCGCGGATGATCCGCGCGACCCGGATCGAGGGGCTGAGCATCAGCGAGGCGGCGGCCGTGGACGGGATCGGCGAATCCGACGTGAAGGTCTCGGTCCATCGCGGCCTCAAGGCGCTGATGGCGCGAATACAGGGAGGCGCGCGATGA
PROTEIN sequence
Length: 180
MRANEDELRRLMISGLDGNAADHAALLRLLVPVLRGFYRRRSSGADDDIEDLVQETLIAVHTRRASYDRERAFTAWLFAVARYKMIDHFRRVRRLQPIEGLEEVLVADGFEDASGARLDVEELLGTLPPKQARMIRATRIEGLSISEAAAVDGIGESDVKVSVHRGLKALMARIQGGAR*