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SCNpilot_expt_500_bf_scaffold_8571_5

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 33 / 55 BSCG 33 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: 2751..3587

Top 3 Functional Annotations

Value Algorithm Source
L-carnitine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02129}; Short=CDH {ECO:0000256|HAMAP-Rule:MF_02129};; Short=L-CDH {ECO:0000256|HAMAP-Rule:MF_02129};; EC=1.1.1.108 {ECO:0000256|HAMAP-Rule:MF_02129};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.5
  • Coverage: 260.0
  • Bit_score: 299
  • Evalue 4.00e-78
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7B1FE similarity UNIREF
DB: UNIREF100
  • Identity: 77.2
  • Coverage: 259.0
  • Bit_score: 400
  • Evalue 1.50e-108
bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase similarity KEGG
DB: KEGG
  • Identity: 55.2
  • Coverage: 261.0
  • Bit_score: 288
  • Evalue 2.70e-75

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Taxonomy

Novosphingobium nitrogenifigens → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 837
GTGGCGCGAGGCTCTGTGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGATCTACCGCGTCGCGGGCGGCGAGGCGGGGATGCGGCATTTCCTCGCGCAGTTCGGCCCGGCGCTGAAGCTGCCGTGGACGAAGCTGGAGGCGCCGGAGCTGACCGACGCGCTGGTCGATCGCGTGGCCGAACAGTCCGACGATCAGGCCGCCGGCGTCTCGATCCGAGAGCTTGAACGGACGCGCGACGATGCTTTGGTCGCGGTGCTCTCCGGCCTGCGCGGACAGGATTACGGCGCGGGCAGGACGCTCGCCGATTATGCACGTGTGCTGATGGCGAAGATGCCCGCCGCCTCCGGCGAGGTCGATGAGACGCGGCCGCTCGCGCTCCATGAGGCGGACGTGGCAGCGGAGTGGATCGACTATAACGGCCATATGACCGAGCATCGCTATCTCCAGGTGTTCGGCGACACGACCGATGCGCTGCTGCGCCATCTGTCGGTCGATGCCGATTATCTGGCGAACCACGGAAGCTGGTACACGGTCGAGACGCATATCCGCCATCTCGGCGAGGCGAAGGCCGGCGACCGGCTGACCGCGACGACGCAGGTGCTGGGCGCGGACGAGAAACGGCTGCACGTCTTCCACAGCCTGTCGCGCGGAAGCGACGGCGCGTGCGTCGCGACCGCCGAGCAGATGCTGCTTCACGTCGATGCCGCCACCGGGCGCGGCGGCCCCGCTTCCGGCGCGCCGGCCGCGCGGGCCGCGGCGCTGGGGAAGGCGCAGGCGGTGCTCCCCTTGCCCGATGGCGCGGGGCGGCGGATCGCGATGCCGGGGAAATGA
PROTEIN sequence
Length: 279
VARGSVXXXXXXXXXXXLIYRVAGGEAGMRHFLAQFGPALKLPWTKLEAPELTDALVDRVAEQSDDQAAGVSIRELERTRDDALVAVLSGLRGQDYGAGRTLADYARVLMAKMPAASGEVDETRPLALHEADVAAEWIDYNGHMTEHRYLQVFGDTTDALLRHLSVDADYLANHGSWYTVETHIRHLGEAKAGDRLTATTQVLGADEKRLHVFHSLSRGSDGACVATAEQMLLHVDAATGRGGPASGAPAARAAALGKAQAVLPLPDGAGRRIAMPGK*