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SCNpilot_expt_500_bf_scaffold_10232_3

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 33 / 55 BSCG 33 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(1921..2400)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B41E89 similarity UNIREF
DB: UNIREF100
  • Identity: 76.7
  • Coverage: 159.0
  • Bit_score: 240
  • Evalue 1.50e-60
Sphingomonas taxi strain 30a NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29496.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.6
  • Coverage: 158.0
  • Bit_score: 247
  • Evalue 1.70e-62
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 61.5
  • Coverage: 161.0
  • Bit_score: 197
  • Evalue 3.60e-48

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Taxonomy

Sphingomonas taxi → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
TTGGACGAGATCGAACGCGCGCTGGCAAGCATGTTGCCCCGCCTGCGTCGCTTCGCGCATGGCCTCGCCCGCGATCGCGCCGACGCGGACGACCTGACGCAGGCCGCCGCGGAGCGCATCCTGAAATCGCGGGCGCAATGGCGCCCCGGCACCAGCTTCGATGCATGGGCCTATCGCATCCTGCGCAACCTGTGGATCGACACCACGCGCAGCCGCCGGCGTCACGACGCCGTGCTGGCGCCGGAGGAACAGGGGCTGTCGGTCGGCGCTGCGGGAGAGGCGGAGGCGAATGTCGAGCTTGGCTATCTGATGCGCGCGATGGCCCGCCTGCCCGAGGAGCAGCGCGAGGCGGTGGCGCTGGTGATGATCGAGGGGCTGGCCTATGCGGAAGCCGCCGAGGTGCTGGATATCCCGATCGGCACGCTGACCAGCCGCCTCGTGCGCGGCCGTCAGGCGCTGATGGCGATGCTGGAGGATTGA
PROTEIN sequence
Length: 160
LDEIERALASMLPRLRRFAHGLARDRADADDLTQAAAERILKSRAQWRPGTSFDAWAYRILRNLWIDTTRSRRRHDAVLAPEEQGLSVGAAGEAEANVELGYLMRAMARLPEEQREAVALVMIEGLAYAEAAEVLDIPIGTLTSRLVRGRQALMAMLED*