ggKbase home page

SCNpilot_expt_500_bf_scaffold_12268_2

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 33 / 55 BSCG 33 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(210..479)

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway, VirB3-like family protein n=2 Tax=Sphingomonadaceae RepID=F3X045_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 92.9
  • Coverage: 85.0
  • Bit_score: 169
  • Evalue 1.40e-39
Conjugal transfer protein {ECO:0000313|EMBL:EQB12126.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.9
  • Coverage: 85.0
  • Bit_score: 169
  • Evalue 2.00e-39
type IV secretory pathway, VirB3 family protein; K03198 type IV secretion system protein VirB3 similarity KEGG
DB: KEGG
  • Identity: 91.8
  • Coverage: 85.0
  • Bit_score: 168
  • Evalue 1.30e-39

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingobium lactosutens → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 270
ATGATCGGCGATGAGGCCGTTCCCGGCTATTTCGCGCCGGTCCATCGCGCGCTCAGCGAGCCGATCCTGCTGGGCGGCGCGCCGCGCGCGCTGGCGATCGTCAACGGGACGCTCGCCGGCGCGATCGGGCTCGGCCTGCGCCTGTGGATCGCCGGCATCGTGATCTGGGCGATCGGTCATGCCTTGTCGGTCTGGGCGGCGCGGCGCGATCCCCAGTTCGTCGACGTCGCCCGCCGTCACCTCCGCTATCCGGCCTGGATGCGGCCATGA
PROTEIN sequence
Length: 90
MIGDEAVPGYFAPVHRALSEPILLGGAPRALAIVNGTLAGAIGLGLRLWIAGIVIWAIGHALSVWAARRDPQFVDVARRHLRYPAWMRP*