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SCNpilot_expt_500_bf_scaffold_17517_3

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 33 / 55 BSCG 33 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(2268..2765)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.4
  • Coverage: 178.0
  • Bit_score: 209
  • Evalue 3.20e-51
2''''-5'''' RNA ligase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B56951 similarity UNIREF
DB: UNIREF100
  • Identity: 59.2
  • Coverage: 179.0
  • Bit_score: 207
  • Evalue 1.50e-50
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 57.5
  • Coverage: 179.0
  • Bit_score: 195
  • Evalue 1.40e-47

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Taxonomy

Sphingomonas taxi → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 498
ATGCACCGCCTGTTCGTCGCCCTGCGCCCTCCCCCGGCGATCCGCGCCGCGCTCCTTCAGGTGATGGGGGGCGTGGCCGGCGCGCGCTGGCAGGATGATGCGCAACTCCACCTCACCGTGCGCTTCATCGGCGAGGTCGAGCGGCCGCTGGCGGAGGAGATCGCGCTGGCGCTGTCCGGCGTCGTGGCGCCCGCGCCGGAGGTCGCGCTCGCCGGCGTCGGGCGGTTCGACAAGCGCGCGGCGCTCCACCGCAAGACCGATCACGCGCTGGTGCGGCTGGGGCTGGAGCCGGAACGGCGCGCCTATATGCCGCATATCACCCTCGCCCGCCTGCCGCGCAGCGCGGGCCACGGCGCGATGATCGAACGCTGGCTGGCGGACCACGCAGCCCTCTCCAGCGCGCCGTTCACGATGGAGGAACTGATCCTCTACGAGAGCCGGCTCGGGCATGACGGGGCGAGCTATGCCCCTGTGCTGCGCCATCCGCTCGGCCGGTGA
PROTEIN sequence
Length: 166
MHRLFVALRPPPAIRAALLQVMGGVAGARWQDDAQLHLTVRFIGEVERPLAEEIALALSGVVAPAPEVALAGVGRFDKRAALHRKTDHALVRLGLEPERRAYMPHITLARLPRSAGHGAMIERWLADHAALSSAPFTMEELILYESRLGHDGASYAPVLRHPLGR*