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SCNpilot_expt_500_bf_scaffold_12340_11

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

near complete RP 42 / 55 MC: 1 BSCG 44 / 51 MC: 6 ASCG 14 / 38 MC: 4
Location: 6673..7497

Top 3 Functional Annotations

Value Algorithm Source
Autoinducer 2-binding protein LsrB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSX7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 79.0
  • Coverage: 205.0
  • Bit_score: 312
  • Evalue 4.10e-82
  • rbh
Autoinducer 2-binding protein LsrB {ECO:0000313|EMBL:EYR84558.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 205.0
  • Bit_score: 312
  • Evalue 5.80e-82
sugar ABC transporter substrate-binding protein; K10555 AI-2 transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 82.4
  • Coverage: 187.0
  • Bit_score: 302
  • Evalue 1.00e-79
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 825
ATGTTCCACCATCTCAAGAAAGCATTCATTGCATCATCTCTCACACTGGTCATCGCATCGGCCGCCCTTGCGCAGGACAAGCCGAAAGTCGCCTTTGTGCCGCAGCTGATCGGCATTCCCTATTTCAACGCCATGGAAGAAGGCGGCAAACGTGCCGCAAGCGAACTGGGCGTCGATTTCATCTATACCGGCCCGGTCGATACCAACCCGGTCGACCAGTTGCAGATTGTGCAGAACCTGATCGACCAGGGTGTCAACGCCGTGTCCGTTAGCGTGCTTGACGCTTCCTCCATCGCCCCCGTCGTCGAAGCGGCAAAGGCGAAGGGTATCAAGCTGTTCACCAGCGATAGCGATGCGCCCGACAGTGGGCGAGCCGTCTATGTCGCCCAGGCGACCGACGAAGGTCTCGGCGGCGCTGTCATCGACGAGCTCGTGAAGCGCGTCGGCGACAATGCGAAGATTGGCATCGTCTCCGGCGAGGCGACAGCCTCGAACCTGAATGCCTGGATCGGCTTCATGAAGAAAAGAGCGGCCGAAAAATATCCGAAGCTCCAGCTCCTGAGGCGACCTCATGACCGCCAATCCCGATCTGAAGGCGATCGTCGCGGTCGCATCCTCCACATGCCCGGGCGTCGCGCAGGCGATCGAGACGGCCGGCAAGATCGGCTCGGTCATCGGCACCGGCTATTGCAGCCCGAACACGGCCCGCGCTTACCTCAAGAGCGGCGCATTCGGCTTCACGGTTCTGTGGGACCCGGCTCAGCTTGGCTACCTGACGGTCTGGGCCGGCAAGCAGCTGATCGATGGCAAGCCTTTTGCGGTTGA
PROTEIN sequence
Length: 275
MFHHLKKAFIASSLTLVIASAALAQDKPKVAFVPQLIGIPYFNAMEEGGKRAASELGVDFIYTGPVDTNPVDQLQIVQNLIDQGVNAVSVSVLDASSIAPVVEAAKAKGIKLFTSDSDAPDSGRAVYVAQATDEGLGGAVIDELVKRVGDNAKIGIVSGEATASNLNAWIGFMKKRAAEKYPKLQLLRRPHDRQSRSEGDRRGRILHMPGRRAGDRDGRQDRLGHRHRLLQPEHGPRLPQERRIRLHGSVGPGSAWLPDGLGRQAADRWQAFCG*