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SCNpilot_expt_500_bf_scaffold_2524_20

Organism: SCNPILOT_EXPT_750_P_Devosia_62_26

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 11 / 38 MC: 2
Location: comp(20279..20833)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=2 Tax=Bartonella tamiae RepID=J0R2G2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 78.1
  • Coverage: 178.0
  • Bit_score: 295
  • Evalue 2.70e-77
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.8
  • Coverage: 184.0
  • Bit_score: 344
  • Evalue 9.30e-92
rpoE; RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 79.9
  • Coverage: 174.0
  • Bit_score: 294
  • Evalue 3.20e-77

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Taxonomy

Devosia riboflavina → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGAGCGCCGAAACTCCCTCCTTCAAACGCGAAATGCTGGCGACCTTGCCCAGCCTGCGTGCCTTTGCGGTGTCGCTGACCGGCAAGCACGACAAGGCCGATGACCTCGTTCAGGATACGGTCATGAAAGCCTGGGCCAAGCAGTCCAGCTTCGAGATGGGCACCAATATCAAGGCCTGGCTCTTCACCATCCTGCGTAACGAATTCTATAGCCAGATGCGCAAGCGCGGTCGCGAAGTGCAGGATTCCGATGGGGTTTTCACCGAACGCCTGTCGGTGCATCCGTCGCAATACGGCTCCATGGATCTGGAAGATTTCAAGAAGGCGCTGTCGCAGTTGCCCGATGACCAGCGCGAAGCGGTGATCCTTATCGGCGCCTCCGGCTTCTCTTATGAAGAAGCTGCCGAAATCTGCGATTGCGCTGTCGGTACCATGAAGAGCCGCGTCAGCCGGGCCCGCTCGCGCCTGGCGGAGATGCTGAAGATCTCGGGCGAATCCGACTATGGCCCCGATGCCGTGTCAGCCCAGGTGACATCGGGCAACCACTCGTTCTGA
PROTEIN sequence
Length: 185
MSAETPSFKREMLATLPSLRAFAVSLTGKHDKADDLVQDTVMKAWAKQSSFEMGTNIKAWLFTILRNEFYSQMRKRGREVQDSDGVFTERLSVHPSQYGSMDLEDFKKALSQLPDDQREAVILIGASGFSYEEAAEICDCAVGTMKSRVSRARSRLAEMLKISGESDYGPDAVSAQVTSGNHSF*