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SCNpilot_expt_500_bf_scaffold_6588_9

Organism: SCNPILOT_EXPT_750_P_Devosia_62_26

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 11 / 38 MC: 2
Location: comp(7488..8027)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z7_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 55.2
  • Coverage: 181.0
  • Bit_score: 187
  • Evalue 1.00e-44
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.6
  • Coverage: 179.0
  • Bit_score: 301
  • Evalue 6.70e-79
16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 55.2
  • Coverage: 181.0
  • Bit_score: 187
  • Evalue 3.20e-45

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Taxonomy

Devosia chinhatensis → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 540
ATGGCAGACAATTCCAACCGCATTCTTCTGGGCACGATCGGCGCTGCCCACGGTATCAAGGGCGAGGTACGCATCACCTCCCATACCCAGGATCCCGAGGCGATCGCCTCCTATGGTCCGCTCCACACCGATCGGGCCGGGCTCACCATCACCATTGAAACCGCTCGCCTCAACAAGACGGTGCTCATTGCCCGTCTCAAGGGGGTGCGCGACCGCAATGCGGCCGAACTGCTCAATGGTGTCGGGCTCTATATCGATCGCGACCGCCTGCCCGAGCATGAGGACGAGGACGATTTCTACCATGCCGACCTGATCGGGCTCGACGCACGGCTGGAGGAAACCGGGGTCAGCATCGGGGAAGTGGTGGCGCTGCCGAATTTTGGGGCCGGCGATCTCATTGAAGTGCGCGATCCGCGCTCGGGCGACACGTTCCTGTTCCCCTTCACCAAGGCGGTCGTCCCGACCATTCGCATCGCCGATGGCTATCTCACCATTGCGCCGCCGCTCGATGCCGATCCCGGCGAGGAAGAGCCCGATTGA
PROTEIN sequence
Length: 180
MADNSNRILLGTIGAAHGIKGEVRITSHTQDPEAIASYGPLHTDRAGLTITIETARLNKTVLIARLKGVRDRNAAELLNGVGLYIDRDRLPEHEDEDDFYHADLIGLDARLEETGVSIGEVVALPNFGAGDLIEVRDPRSGDTFLFPFTKAVVPTIRIADGYLTIAPPLDADPGEEEPD*