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SCNpilot_expt_500_bf_scaffold_3360_1

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_66_14

near complete RP 45 / 55 MC: 3 BSCG 43 / 51 MC: 1 ASCG 10 / 38 MC: 1
Location: 3..293

Top 3 Functional Annotations

Value Algorithm Source
isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] similarity KEGG
DB: KEGG
  • Identity: 92.7
  • Coverage: 96.0
  • Bit_score: 185
  • Evalue 1.10e-44
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.7
  • Coverage: 96.0
  • Bit_score: 185
  • Evalue 2.90e-44
3-isopropylmalate dehydratase large subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=LEUC_NITHX similarity UNIREF
DB: UNIREF100
  • Identity: 92.7
  • Coverage: 96.0
  • Bit_score: 185
  • Evalue 3.50e-44

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Taxonomy

Afipia sp. P52-10 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 291
GTCAACGCCATGGTGGTTCCGGGCTCGGGCCTCGTCAAGGAACAGGCGGAAGCCGAAGGTCTCGACAAGATCTTCAAGGATGCCGGTTTCGAGTGGCGCGAGCCGGGCTGCTCGATGTGCCTCGCCATGAACCCCGACAAGCTGAAGCCGCACGAGCGCTGCGCTTCGACCTCGAACCGCAACTTCGAGGGCCGTCAGGGCTTCAAGGGCCGCACCCACCTGGTCTCGCCCGCCATGGCGGCAGCCGCGGCGGTCACCGGCCACTTCGTCGATATCCGCGAGTGGCAGTAG
PROTEIN sequence
Length: 97
VNAMVVPGSGLVKEQAEAEGLDKIFKDAGFEWREPGCSMCLAMNPDKLKPHERCASTSNRNFEGRQGFKGRTHLVSPAMAAAAAVTGHFVDIREWQ*