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SCNpilot_expt_500_bf_scaffold_3269_10

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_66_14

near complete RP 45 / 55 MC: 3 BSCG 43 / 51 MC: 1 ASCG 10 / 38 MC: 1
Location: 8265..9161

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043051}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080, ECO:0000256|SAAS:SAAS00043054};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.3
  • Coverage: 300.0
  • Bit_score: 413
  • Evalue 3.40e-112
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25] similarity KEGG
DB: KEGG
  • Identity: 67.6
  • Coverage: 296.0
  • Bit_score: 387
  • Evalue 4.50e-105
tRNA pseudouridine synthase B n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R997_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 67.6
  • Coverage: 296.0
  • Bit_score: 387
  • Evalue 1.40e-104

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Taxonomy

Devosia sp. DDB001 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 897
TTGACCACCGAGAAGCGCCAGAAGCGCGACGTCTCCGGTTGGTTGGTTCTCGACAAGCCCTATGACATGACCTCCACCCAGGCGGTGGGCAAGCTCCGTTGGCTGCTCGGCGCCAAGAAGGCCGGCCATGCCGGAACGCTGGACCCGCTGGCGACCGGCATCCTGCCGATCGCCCTGGGCGAGGCGACCAAGACCGTGCCCGCCGTGCAGGACGGCACCAAGGTCTACCGCTTCGCCATCAAGTGGGGCGAGGAAACCACCACCGACGACGCCGAGGGGGAAGTCAGCGCCCGCTCGGATCTGCGTCCATCGCAGGCCGAAATTCTTGCCGCGCTTCCAGGCTTCACCGGCGAGATCATGCAGACGCCGCCGGCCTTCTCGGCCATCAAGGTCGATGGTGAGCGCGCCTATGACTTGGCGCGCGCCGGTGAGACGGTCGAGCTCGCGGCACGGCCCGTCTATATCGAGGCGCTCCGCCTCATCGAGCATCTGGGCGAGATCAGCCGCCTGGAAATGACCTGCGAGAAGGGCACCTATGTGCGCGCCTTGGCGCGCGATCTCGCCCGCCAACTGGGGACGCGCGGCCACGTGGTCGAACTGCGCCGCACCGCGGTCGGCCCGTTCAGCGAGGCGCGGGCGGTGACGCTGGAGATGCTGGAAGCGGCGGCCGATCGCGACGCCCTGCTGCTGCCGATCTCGGCCGGGTTGGCGCTGCTGCCCGAGATTCGGCTCACCCCCGATCAGGTCAGTGCCATTCGGCATGGCAATCCGGTGCTGCTTGGCGGCGCCGCGGCGCCGATCGCGCTCGACAGCGCCTGGGCCAGCAGCGCCGGCGTCGCCGTGGCGCTCGGCCGGGTCGAAGCCGGCATGTTCAAGTCGCACCGGGTAATCGCCTGA
PROTEIN sequence
Length: 299
LTTEKRQKRDVSGWLVLDKPYDMTSTQAVGKLRWLLGAKKAGHAGTLDPLATGILPIALGEATKTVPAVQDGTKVYRFAIKWGEETTTDDAEGEVSARSDLRPSQAEILAALPGFTGEIMQTPPAFSAIKVDGERAYDLARAGETVELAARPVYIEALRLIEHLGEISRLEMTCEKGTYVRALARDLARQLGTRGHVVELRRTAVGPFSEARAVTLEMLEAAADRDALLLPISAGLALLPEIRLTPDQVSAIRHGNPVLLGGAAAPIALDSAWASSAGVAVALGRVEAGMFKSHRVIA*