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SCNpilot_expt_500_bf_scaffold_5050_2

Organism: SCNPILOT_EXPT_750_BF_Myxococcales_68_20

partial RP 37 / 55 MC: 6 BSCG 35 / 51 MC: 4 ASCG 7 / 38
Location: comp(1346..1753)

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein Vgr n=1 Tax=Variovorax paradoxus RepID=UPI000367CA2E similarity UNIREF
DB: UNIREF100
  • Identity: 42.7
  • Coverage: 89.0
  • Bit_score: 64
  • Evalue 1.30e-07
putative type VI secretion system protein, Vgr family similarity KEGG
DB: KEGG
  • Identity: 60.8
  • Coverage: 51.0
  • Bit_score: 63
  • Evalue 6.80e-08
Putative type VI secretion system protein, Vgr family {ECO:0000313|EMBL:AGU47743.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.8
  • Coverage: 51.0
  • Bit_score: 63
  • Evalue 3.00e-07

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 408
ATGATCGAGATCCGCCTCCGTGCTGCTGCGTCGAACCCGGCGTCGCGCCCCTGGCGTCGGGGCATCTCGCTCGCCGCGCTCGCGCTTGGCGTCGTCGCGCCGGTCGCTACGAGCCGCGCGCAGGATGCCGCCCCGGCCCTGCGGTCGGCGACGCAGGAGCTCGCGGACGTGCGGGCGCTGAAGGTGGTGACCATCGACGGCGGCAAGGCGGTTGCGATCGACGGCGGCGAGTCGATCTCGATCACGTCGGGAGCGGCGAGCATCACGATGAAGAAGGACGGGACGATCGTCATCAAGGGGACCGACGTCGTCATCGACCGTGCGAACGAGGTGACGACGACCCCGGCGAACGGCGCGCCGCCGTGCACGCAGACGCCGCGTGGATCTCGGATGTCCGAGATCTTCTGA
PROTEIN sequence
Length: 136
MIEIRLRAAASNPASRPWRRGISLAALALGVVAPVATSRAQDAAPALRSATQELADVRALKVVTIDGGKAVAIDGGESISITSGAASITMKKDGTIVIKGTDVVIDRANEVTTTPANGAPPCTQTPRGSRMSEIF*