ggKbase home page
Advanced Search
Search Help

SCNpilot_cont_1000_p_UNK

In projects: SCNPILOT_CONT_1000_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 16.58 Longest contig: 150.06 Kbp Bin length: 104.08 Mbp GC content: 53.80 %
Contigs count: 55582 Features count: 142933 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 25 / 38 MC: 19
Displaying items 201-250 of 55582 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_p_scaffold_9854
Order: Rhizobiales (70%)
10 4755 bp 58.38 6.94 67.76
SCNpilot_cont_1000_p_scaffold_6255
Order: Rhizobiales (90%)
10 7954 bp 66.86 4.78 89.09
SCNpilot_cont_1000_p_scaffold_9602 10 4858 bp 45.41 5.51 62.99
SCNpilot_cont_1000_p_scaffold_9858 10 5763 bp 49.82 28.67 66.22
SCNpilot_cont_1000_p_scaffold_18112 10 3661 bp 45.51 6.08 76.21
SCNpilot_cont_1000_p_scaffold_9876 10 4744 bp 46.06 4.69 60.58
SCNpilot_cont_1000_p_scaffold_6536
Order: Flavobacteriales (50%)
10 8380 bp 39.59 16.29 94.30
SCNpilot_cont_1000_p_scaffold_3141
Species: Rhodopseudomonas palustris (70%)
10 12047 bp 59.43 6.89 93.09
SCNpilot_cont_1000_p_scaffold_6038
Order: Rhizobiales (80%)
10 8065 bp 57.33 5.27 86.60
SCNpilot_cont_1000_p_scaffold_5019
Order: Rhizobiales (70%)
10 8342 bp 60.99 8.72 72.50
SCNpilot_cont_1000_p_scaffold_18655 10 4276 bp 42.75 10.82 63.99
SCNpilot_cont_1000_p_scaffold_9656 10 4838 bp 42.56 6.10 66.72
SCNpilot_cont_1000_p_scaffold_10240 10 4622 bp 48.14 6.22 72.11
SCNpilot_cont_1000_p_scaffold_3425
Class: Alphaproteobacteria (50%)
10 11323 bp 36.53 7.00 61.84
SCNpilot_cont_1000_p_scaffold_4634
Species: Bosea sp. LC85 (50%)
10 8876 bp 63.24 6.62 87.71
SCNpilot_cont_1000_p_scaffold_21553
Order: Rhizobiales (60%)
10 4930 bp 58.36 5.83 68.09
SCNpilot_cont_1000_p_scaffold_5813 10 7380 bp 60.18 5.25 81.50
SCNpilot_cont_1000_p_scaffold_6584 10 6662 bp 39.36 8.48 43.32
SCNpilot_cont_1000_p_scaffold_12620 10 3901 bp 46.30 4.61 68.91
SCNpilot_cont_1000_p_scaffold_16900 10 3875 bp 46.22 5.48 53.42
SCNpilot_cont_1000_p_scaffold_8506
Order: Nitrosomonadales (50%)
10 7648 bp 51.79 70.77 87.24
SCNpilot_cont_1000_p_scaffold_14558
Order: Burkholderiales (50%)
10 6102 bp 59.44 50.11 89.09
SCNpilot_cont_1000_p_scaffold_10791 10 4429 bp 46.51 4.46 62.38
SCNpilot_cont_1000_p_scaffold_8002
Genus: Rhizobium (80%)
10 7997 bp 56.76 15.04 71.91
SCNpilot_cont_1000_p_scaffold_26155 10 4433 bp 57.32 84.09 50.55
SCNpilot_cont_1000_p_scaffold_5331
Genus: Chryseobacterium (60%)
10 7907 bp 37.76 15.21 85.67
SCNpilot_cont_1000_p_scaffold_4420
Class: Actinobacteria (50%)
10 9221 bp 66.31 20.33 77.82
SCNpilot_cont_1000_p_scaffold_15208
Order: Rhizobiales (60%)
10 3366 bp 63.55 6.46 96.43
SCNpilot_cont_1000_p_scaffold_4683
Phylum: Proteobacteria (90%)
10 8809 bp 60.32 9.11 93.55
SCNpilot_cont_1000_p_scaffold_17119 10 5188 bp 56.38 43.13 57.02
SCNpilot_cont_1000_p_scaffold_6629 10 6616 bp 45.71 12.47 32.01
SCNpilot_cont_1000_p_scaffold_9467 9 4912 bp 52.06 118.38 61.93
SCNpilot_cont_1000_p_scaffold_13243 9 4672 bp 51.95 77.05 51.82
SCNpilot_cont_1000_p_scaffold_10312 9 4595 bp 49.08 6.37 67.18
SCNpilot_cont_1000_p_scaffold_10827 9 6388 bp 54.27 41.01 63.02
SCNpilot_cont_1000_p_scaffold_17654 9 3706 bp 45.14 6.41 53.51
SCNpilot_cont_1000_p_scaffold_4974
Domain: Bacteria (66.67%)
9 8394 bp 55.67 7.80 74.52
SCNpilot_cont_1000_p_scaffold_11984 9 4395 bp 47.92 10.24 57.82
SCNpilot_cont_1000_p_scaffold_13782 9 3638 bp 48.24 4.67 84.77
SCNpilot_cont_1000_p_scaffold_13527 9 3691 bp 46.30 6.98 53.48
SCNpilot_cont_1000_p_scaffold_10848 9 4411 bp 42.64 4.59 44.07
SCNpilot_cont_1000_p_scaffold_14111 9 3570 bp 46.39 5.53 71.60
SCNpilot_cont_1000_p_scaffold_13026 9 3808 bp 48.66 6.04 62.55
SCNpilot_cont_1000_p_scaffold_10350 9 4582 bp 49.85 7.69 66.72
SCNpilot_cont_1000_p_scaffold_9514 9 4893 bp 47.84 5.57 54.02
SCNpilot_cont_1000_p_scaffold_10867 9 4405 bp 46.42 6.81 69.67
SCNpilot_cont_1000_p_scaffold_5915 9 8331 bp 61.84 4.77 89.81
SCNpilot_cont_1000_p_scaffold_2983
Order: Rhizobiales (66.67%)
9 12474 bp 59.30 7.44 86.08
SCNpilot_cont_1000_p_scaffold_7873 9 5722 bp 45.11 5.59 70.10
SCNpilot_cont_1000_p_scaffold_15537 9 3312 bp 51.30 65.07 85.78
Displaying items 201-250 of 55582 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.