ggKbase home page

SCNpilot_cont_1000_p_scaffold_31_16

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(14167..15186)

Top 3 Functional Annotations

Value Algorithm Source
extracytoplasmic binding receptor n=1 Tax=Variovorax paradoxus RepID=UPI00036F57A7 similarity UNIREF
DB: UNIREF100
  • Identity: 82.3
  • Coverage: 299.0
  • Bit_score: 496
  • Evalue 2.50e-137
  • rbh
Variovorax paradoxus strain MEDvA23 contig_10, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35251.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.8
  • Coverage: 339.0
  • Bit_score: 554
  • Evalue 1.10e-154
tctC; extracytoplasmic binding receptor similarity KEGG
DB: KEGG
  • Identity: 58.8
  • Coverage: 340.0
  • Bit_score: 396
  • Evalue 6.50e-108
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1020
ATGCGCCTGCTGTGCTTGGCCGGGACACTCGCCTGCGCCGGCGGCGTCCTTGCACAATCGCCTGGCGTGGTGCGCGCCGAGCCCAATCCGTCAGGCGCGTCGAGTTCCCGGGTGGCGGATCTGAATTGGCCGACCCGGCCGCTGCGCCTCGTCGTCGGCTTTGGCGGCGGCTCATCGCCGGATTTCGTGGCGCGTGTGCTGGCCACATCCATGGCGAAGGCGCTGGGCCAGCCAGTGATCGTCGAAAACCATGCCGGTGCCAGCGGCAACATCGCTGCGGGCATCGTCGCGAAGTCGACCGACCAGCACACGATCGGCATCCTCATCAACGGCAACATGACCATTGCCAAGATCCTCAATCCGGCGACACCCTACGATCCGCAGAAGGACCTCGTGCCGCTGAGCATCCTTTGCACGGCCCCTCTGGTGCTCGCCACGACACCGCAGGTATCGCAGGCCGATGCCCGCGGTTTCCTCACGGCTGCGCGTGCGGCCGGCGGCACCTGGAGCTATGGCTCTCCGGGCATCGGAACGATCGGCCACCTCGGCATGGAACTCCTCAAGGCCCGCACCGGCATCGCCGCCGTGCACGTGCCCTATCAGGGCAATCCGCAGGTCATCAGCGGCCTGATCGGCGCGCAGCTCCAGCTGGCGCTGCTTCCGCCGGGCCTCGCCGACGAACAGATCAAGGCTGGAAAGCTGCGCGCGATCGGCGTGACCTCGGCGCGCCGCTCCACGCTCGTGCCGGACTATCCGAGCTTGCAGGAAGTGGGATTGAAAGATTTCGAGCTCGAGATCTGGACTGCAGCGGCAGCCCCTGCCAGCCTGCCCGCTCCCATTGTCCAGCGCTTGAACCAGGTTCTCGCCGAAGTCATCCGCCTGCCGGAGGTTCGGCAGAAGCTCTTCCAGCATGGCTACGAGGCTGTCGGTATTTCGGGCGAAGCGCTGGCACGGCGGGTGAGAGCGGATACGGCAGCGCTGAGCCAGATCATCGCGAGCCAGGGCATCAAGCTCGAGTAA
PROTEIN sequence
Length: 340
MRLLCLAGTLACAGGVLAQSPGVVRAEPNPSGASSSRVADLNWPTRPLRLVVGFGGGSSPDFVARVLATSMAKALGQPVIVENHAGASGNIAAGIVAKSTDQHTIGILINGNMTIAKILNPATPYDPQKDLVPLSILCTAPLVLATTPQVSQADARGFLTAARAAGGTWSYGSPGIGTIGHLGMELLKARTGIAAVHVPYQGNPQVISGLIGAQLQLALLPPGLADEQIKAGKLRAIGVTSARRSTLVPDYPSLQEVGLKDFELEIWTAAAAPASLPAPIVQRLNQVLAEVIRLPEVRQKLFQHGYEAVGISGEALARRVRADTAALSQIIASQGIKLE*