ggKbase home page

SCNpilot_cont_1000_p_scaffold_31_29

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 45928..46464

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, ECF subfamily n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SZB4_JANMA similarity UNIREF
DB: UNIREF100
  • Identity: 48.5
  • Coverage: 169.0
  • Bit_score: 158
  • Evalue 6.50e-36
Uncharacterized protein {ECO:0000313|EMBL:KDP88703.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.8
  • Coverage: 170.0
  • Bit_score: 191
  • Evalue 9.70e-46
rpoE4; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 48.5
  • Coverage: 169.0
  • Bit_score: 158
  • Evalue 2.00e-36

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Cupriavidus sp. SK-3 → Cupriavidus → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGGCCGACCGCAGCCGCGCCGCGCTGAGTGCATTCGTGACGAGTCACTACGTGCAACTGGTGCGCCGCCTGACGCGGCACCTTGGATGCCCGGACCTTGCGAGCGATGCCCTGCATGATGCGTGGCTGCGCCTTGCGGACATCGATTCCTTCCATCTCGTGGGCAACCCCGACGCCTACGTGTATCGCGCGGCCTGCAATGCCGCGCTGGACCGCCTGCGCAGCGCCCGGCTGCGCCAGCATGCGCACGAGGCCGATGCCGAACTGGCCCGCGTCGCGGACCATGCGCCGGGACCCCATCACATCGCGGAGGCGCGCTCCGATGTCATGGCCGTGGACCGCGCCATGCGGCACCTGCCGCACCGCCACCGGTCGATACTGGTCGGCTTGCGGGTGCACGAGATGAGCAGGCAGGAGGTCGCCATTCGCCAGGGGCTCTCGCTGCGGCGCGTGGACACGGTGCTCGACCAGGCGCTGGCGTACTGCGCGGGGCATCTGCGCGGCAGGCCCCATGCGGGCCCCTCCGCGCCCATCTGA
PROTEIN sequence
Length: 179
MADRSRAALSAFVTSHYVQLVRRLTRHLGCPDLASDALHDAWLRLADIDSFHLVGNPDAYVYRAACNAALDRLRSARLRQHAHEADAELARVADHAPGPHHIAEARSDVMAVDRAMRHLPHRHRSILVGLRVHEMSRQEVAIRQGLSLRRVDTVLDQALAYCAGHLRGRPHAGPSAPI*