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SCNpilot_cont_1000_p_scaffold_234_17

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(20072..20755)

Top 3 Functional Annotations

Value Algorithm Source
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000378B13C similarity UNIREF
DB: UNIREF100
  • Identity: 82.5
  • Coverage: 228.0
  • Bit_score: 352
  • Evalue 2.30e-94
  • rbh
two component transcriptional regulator, LuxR family similarity KEGG
DB: KEGG
  • Identity: 52.1
  • Coverage: 234.0
  • Bit_score: 204
  • Evalue 4.10e-50
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AGU51618.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.1
  • Coverage: 234.0
  • Bit_score: 204
  • Evalue 1.90e-49

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 684
ATGGCCACCGCCACATCACTGCCGCCACATGCCGGCCTCTTGCGCGGCGAGGCTGGCGTTGTCATACCGGCGCGGGGCATCCTGGTGGTCGACGACCACGAATTGGTACGCCTGGGCCTGAGGGCACTGCTGCTGGCAGAGACGGGCAGCGTACCGGTGCACGAGGCCCGCTGCCTGAGCGACGCATTGCGCTTGTACGAGTTCCATTTGACGTCACACCTCCTGGTGCTGCTCGATCTCGATCTGCCCGATTCCCAGGGTCTGGACACCCTCATGCGCTTCAGGCGCGCCTTTCCTGCATCGCGCGTGGTCGTGCTCTCGGGCAAGGACAGCCATGCGCTGATGCATGGAGCCACGGCGCTCGGGGCGCAGGCTTTCCTGCCGAAGACCGGCCACCTGGGCGAGGTGTTGCGCTACGTGCGGGACAACGACCTTGCCGCGCTGCCGCTCGCGATGCCCGCGGCGCCTGCAGCCGTGCGCACGACGGCGTCGACGGCCGAGCTGCAGCCGCAACTCAATGCGCGCCAGGTCGAGATCCTCGACTGGCTGCTGGCCGGCAAGTCGAACAAGGAGATCGCGCAGCTTTCGAACCTGACCGAAGGCACGGTCAAGAACCATGTGTCCACACTGCTGTTGCTGTTCGGCATGCGCTCGCGGGCCCAGCTCATCAGCAGCCTGAAGTGA
PROTEIN sequence
Length: 228
MATATSLPPHAGLLRGEAGVVIPARGILVVDDHELVRLGLRALLLAETGSVPVHEARCLSDALRLYEFHLTSHLLVLLDLDLPDSQGLDTLMRFRRAFPASRVVVLSGKDSHALMHGATALGAQAFLPKTGHLGEVLRYVRDNDLAALPLAMPAAPAAVRTTASTAELQPQLNARQVEILDWLLAGKSNKEIAQLSNLTEGTVKNHVSTLLLLFGMRSRAQLISSLK*