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SCNpilot_cont_1000_p_scaffold_234_27

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 27955..29430

Top 3 Functional Annotations

Value Algorithm Source
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003704358 similarity UNIREF
DB: UNIREF100
  • Identity: 94.6
  • Coverage: 478.0
  • Bit_score: 901
  • Evalue 3.70e-259
  • rbh
Putative HTH-type transcriptional regulator YdcR {ECO:0000313|EMBL:EWS59363.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.5
  • Coverage: 481.0
  • Bit_score: 588
  • Evalue 9.80e-165
GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 61.5
  • Coverage: 467.0
  • Bit_score: 584
  • Evalue 2.40e-164

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Taxonomy

Methylibium sp. T29-B → Methylibium → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1476
ATGAACCGCTACGAGAAGCTTGCCGACAACATCGCTCAGCGCATTCGCGCGGGTAACCTAAAGGCGAACGATCGCCTTCCCTCCGTGCGCGAACTGAAGTCGAAGATGGGTATCAGTGCGTCCACCGTGTTCTCTGCTTACTACCTGCTGGAGGCGCAAGGGCTTGTCGAAGCGCGGCAGCGGTCGGGATACTTCGTTCGAGCGGGCGCGGAAATGCCGGCCAACGAACTTGCCGCCAGCGAGCCTGTCCTTCGGTCCATGTCGGTCGACGTCTCGTCGCTTGTCTTTCAGGTCCTTGCACAGGCTCGCGAGCGCGACATGGTCCCGCTCGGCTCGGCTTTTCCTTCGCCAGAGCTGTTCCCCTTCGAGCAACTTGCCGCCGGCCTGACGCGAGCGCTCAAGCGGATGGATCCCTGGCAGACCATCGAAGATTTGTCACCAGGAAACGCCCTTTTACGCCATCAGATCTCTCGCCGTTACGGCAGCGTCGGGATGGACGTTCCTGCGTCAGAACTGGTCATCACCAGCGGGGCGATGGAAGCCCTCAATCTTGCGCTCGAATCGGTGACGCAGCCAGGCGACGTCGTTGCGATCGAAACCCCAACCTTTTATGCTGCGTTGCAGGCACTGGAGCGGCGCGGTCTTCGCGCGGTCGAGGTTGAGACCCACCCGCGTACAGGCGTGGATCTCAGCTCTCTTGCTCGCGTGATCGACCAGCATCCGGTGAAGGCCTGCTGGTTCATGCCGACCTTCCAGAATCCAATGGGCTGCACCATGAGCGACGCAGCCAAAGAGCAACTGGTCAGCATGCTCGCCGCTCGCGCCATACCGCTGATCGAAGACGACGTATACGGCGAGCTCGCGCATGGGCCTCGGAGACCGCCACCGGCCAAGGCCTGGGATCGGGCTGGCTGGGTGCTGCACTGCAGTTCTTTCTCGAAGTCCCTGGCACCCGGATATCGCATCGGTTGGGTAGCGGGCGGTCGCTTTGCAGCCGCTTTGGGTCGGAACAAGTTGATGAGCTCGCTGGCGACGGCACTTCCCTCGCAACTGGCCTTACAGGAGTACCTCCAACACAAGAGTTTCGATCGTCACCTGCGCGTCCTGCGGCATTCGCTCAGCCGCCAGCAGGCTGCATGCTTGCGACTTATCGATCAATACTTTCCGACTGGAACGCGGGTCACGCGCCCCGAGGGCGGCTATTTCCTGTGGCTCGCGCTGCCAGAAGGTGTCGACTCGCTCGCGCTGCACCAGGACGCTCTTCGGCTCGGCATAGGCGTAGCGCCGGGCCATTTGTTTTCAGCCGACCGTCGATACACCCGGCACCTGCGCATCAACTACGGGTATCTCGGCGACCCGCGCTTGGAGAGCGCTATCAAGAGTCTTGGAGATCTAGCCAACGCACAGCTCCAATCTTCAACTGGAAAATCAGGCCGAGCTTCGAAAAACATTCGTCGAGACCCTAGTCGGCGTTAA
PROTEIN sequence
Length: 492
MNRYEKLADNIAQRIRAGNLKANDRLPSVRELKSKMGISASTVFSAYYLLEAQGLVEARQRSGYFVRAGAEMPANELAASEPVLRSMSVDVSSLVFQVLAQARERDMVPLGSAFPSPELFPFEQLAAGLTRALKRMDPWQTIEDLSPGNALLRHQISRRYGSVGMDVPASELVITSGAMEALNLALESVTQPGDVVAIETPTFYAALQALERRGLRAVEVETHPRTGVDLSSLARVIDQHPVKACWFMPTFQNPMGCTMSDAAKEQLVSMLAARAIPLIEDDVYGELAHGPRRPPPAKAWDRAGWVLHCSSFSKSLAPGYRIGWVAGGRFAAALGRNKLMSSLATALPSQLALQEYLQHKSFDRHLRVLRHSLSRQQAACLRLIDQYFPTGTRVTRPEGGYFLWLALPEGVDSLALHQDALRLGIGVAPGHLFSADRRYTRHLRINYGYLGDPRLESAIKSLGDLANAQLQSSTGKSGRASKNIRRDPSRR*