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SCNpilot_cont_1000_p_scaffold_263_1

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 1..678

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Variovorax paradoxus B4 RepID=T1X7P1_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 225.0
  • Bit_score: 445
  • Evalue 4.40e-122
rpoD; RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 225.0
  • Bit_score: 445
  • Evalue 1.40e-122
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 225.0
  • Bit_score: 445
  • Evalue 6.20e-122

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 678
ATCGCCAAGAAGTACACCAACCGCGGCCTGCAGTTCCTGGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTCGACAAGTTCGAATACCGTCGCGGCTACAAATTCTCGACCTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGCTCGATCGCCGACCAGGCGCGCACCATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGATGAACCGCATTTCGCGCCAGCATTTGCAGGAGTTCGGCTTCGAGCCCGACGCCGGCATCCTGGCCGCGAAGATGGAGATTCCCGAAGACAAGATCCGCAAGATCATGAAGATCGCGAAGGAGCCGATCTCGATGGAAACCCCCATCGGCGACGACGACGATTCGCACCTGGGCGACTTCATCGAGGACAGCAGCAACACGGCACCCATCGAGGCCGCCATGCAGGCCGGCCTGCGCGACGTGGTCAAGGACATCCTCGACAGCCTCACGCCGCGCGAAGCCAAGGTGCTGCGCATGCGCTTCGGCATCGAGATGTCGACCGACCACACGCTGGAAGAAGTCGGCAAGCAGTTCGACGTGACCCGCGAGCGCATCCGCCAGATCGAAGCCAAGGCGCTGCGCAAGCTGAAGCACCCGAGCCGTTCGGACAAGCTGCGCAGCTTCATCGACACCCTGTAA
PROTEIN sequence
Length: 226
IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQHLQEFGFEPDAGILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDSSNTAPIEAAMQAGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLKHPSRSDKLRSFIDTL*