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SCNpilot_cont_1000_p_scaffold_356_15

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 16093..17010

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XDQ2_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 92.5
  • Coverage: 305.0
  • Bit_score: 547
  • Evalue 8.50e-153
  • rbh
transcriptional regulator, LysR family similarity KEGG
DB: KEGG
  • Identity: 92.5
  • Coverage: 305.0
  • Bit_score: 547
  • Evalue 2.70e-153
  • rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU50464.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.5
  • Coverage: 305.0
  • Bit_score: 547
  • Evalue 1.20e-152

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 918
ATGGCCAACCCGATCAATCCCGCGCGCGTCGACTTCGTCACGCTGCGGCTGTTCTGCGCGGTGGCGCAGTCGGGCAGCATCACCAAGGGCGCGGAGGCCTGCCACCTTGCGTTGTCCGCCGCGAGCCGCAGGCTCTCAGACTTCGAGGCGGCCACCGGTTCGAAGCTGCTCGAACGCAGTGCGCAGGGCATCGCGCTCACGCCCGCCGGCCATGTGGCGATGCAACATGCGATGCGCCTCTTCCAGGGCTTCGAGCAGTTCAGCAGCGAGATCAACGACTACTCCAGCGGCGTGCGCGGCCATGTCCGGCTGTGGGCCAACATGTCGGCGCTCACCGAGTTCCTGCCCACCACGCTCGCGACCTTCCTCTCGCAGCATCCCGACATCCGCGTGGAAGTGGAGGAGCAGCTCAGCGGCGACATCGTGCGCGCGCTGGTCGACGGCCTCGCCGACGTCGGCGTCTTCGCGGAGAACACGCCCGCCTACGGCCTCGACGTCGCGCCGTTCCAGACCGACGAGCTGGTGGTGCTGTGCGCCAGGCAGCATCCGCTGGCACGCACGCGAGCGAAGCAGGTCGATTTCAAGACCTGTCTCGCGCATGAATTCGTGGGGCTGAACCGCAGCAGCTCGCTGCTGGAGCTCACTTCACGCGCGGCCGAGCAGGCCGGCGTTCCGATGCGGCTGCGCGTGCAGGTGCGCAGCTTCGACGCCATGTGCCACATGATCGCGGCCAACCTCGGCATCGGCGTGGTGCCGCTCGCGGCGTGCAAGGCGCAGGTGGCGGCACTCGATCTGAAAGTCGTGCGGCTCAGGGATGCGTGGGCCACGCGGCGATTGCTGATGGCGACGAAGACGGGAGCCATCCTGTCGCCGGCGACACAGCTGCTGGTGAAGCAGTTGTTCGCCTCGTCGAACTAG
PROTEIN sequence
Length: 306
MANPINPARVDFVTLRLFCAVAQSGSITKGAEACHLALSAASRRLSDFEAATGSKLLERSAQGIALTPAGHVAMQHAMRLFQGFEQFSSEINDYSSGVRGHVRLWANMSALTEFLPTTLATFLSQHPDIRVEVEEQLSGDIVRALVDGLADVGVFAENTPAYGLDVAPFQTDELVVLCARQHPLARTRAKQVDFKTCLAHEFVGLNRSSSLLELTSRAAEQAGVPMRLRVQVRSFDAMCHMIAANLGIGVVPLAACKAQVAALDLKVVRLRDAWATRRLLMATKTGAILSPATQLLVKQLFASSN*