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SCNpilot_cont_1000_p_scaffold_376_14

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(12447..14180)

Top 3 Functional Annotations

Value Algorithm Source
choline dehydrogenase (EC:1.1.99.1); K00119 [EC:1.1.99.-] similarity KEGG
DB: KEGG
  • Identity: 79.3
  • Coverage: 575.0
  • Bit_score: 931
  • Evalue 9.50e-269
  • rbh
Choline dehydrogenase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UUZ4_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 79.3
  • Coverage: 575.0
  • Bit_score: 931
  • Evalue 3.00e-268
  • rbh
Variovorax paradoxus strain MEDvA23 contig_46, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29000.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.7
  • Coverage: 575.0
  • Bit_score: 941
  • Evalue 4.10e-271

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1734
ATGGAATTCGACTACGTGATCGTGGGCGGCGGGTCCGGCGGCGCCACGCTGGCCGCGCGGCTCAGCGAAGACCCCGCCGTGCATGTCTGCCTGGTCGAGGCCGGCGGCGACGGGCGCGGCGTGCTGGTGCGGGCGCCGGCCGGCGCGGCGGCCATGCTGTCGGGCCGGCCACGCATCAACAACTACGCCTACCAGACCGTGCCGCAGCCCGGCCTGAACGGGCGGCGCGGCTACCAGCCGCGCGGGCGCTGCCTCGGCGGCTCGAGCGCCATCAACGCCATGCTCTACGTGCGCGGCCATCCCAGCGACTACGACGACTGGGAGCGCGCCGGCTGCGCAGGCTGGTCTTACGCCGACGTGCTGCCGTGGTTCAAACATGCCGAGGGCAACCAGCGCGGCGAAAGCGCCATGCACGGCGCGCACGGCCCGCTGCAGGTGTCGGACCAGCAGTCGCCGCGCGAGATCAGCGAAGCCTTCGTGCGCGCGGCCATGGAGTGCGGCGTTCCTCGCAACGACGACTTCAACGACGGCGTGCAGGAAGGCGCCGGGCTCTACCAGGTCACGCAGTTCCACGGCGGCGACAGGAACGGCGAGCGCTGCTCTGCCGCCGCGGCCTACCTGCACCCGGTGATGAACAACCGCCCCAACCTCACGGTGCTGACCGGCACGCAGGCGCAGCGGGTGCTGCTCGACGGCCGCCGCGCCACTGGTGTCGAGGTGCGCAGAGGCGGCAACATCGACACCCTGCACGCACGGCGCGAGGTGGTGCTGTGCGGCGGCGCCTTCAATTCACCGCAGCTGCTGATGCTCTCGGGCATCGGCGACCCGGAGGAACTCGGGCGCCACGGCATCGCGGTGCTGCATGCGCTGCCGGGCGTGGGCCGCAACCTGCAGGACCACGTCGACTTCATCCTCTCCTACCGCACCAGCGCCAAGGGCCTGCCCGGCCTGGGACCGGCCGGGCTCTTCAATTTCGTGAAAGCCATTCCGGAGTGGCGCCGCACGGGCAAGGGCCTGATCTCGACACCCTTCGCCGAAGGCGGCGCCTTCATCAAGACGTCGCCCGAACTGCGCCGGCCCGACCTGCAATTGCACTTCGTGATCAGCCTGGTCGACGACCATGCGCGCAAGCTGCACGGCGGCTTCGGCTTCTCGTGCCATGCGTGCGTGCTGCGGCCCAATGGACGCGGCGACGTGCGATTGAACGACGCAGACCCGGCATCGGCGCCGCGCATCGATCCGCGCTTTCTGTCGGATGCGCAGGACGTGGCGTTGCTGCTGCGCGGCGTGAAGAAGATGCGCGAAATACTGCGCGCGCCGGCGCTCGCGCCCTACCGCCACGAAGAGCTCTACACCGCGAACGTGCAGACCGACGAAGAACTGGAGCGGCACATCCGCGCACGCGCAGACACCATCTATCACCCGGTGGGCACCTGCAAGATGGGCACCGACGCCATGGCCGTGGTCGACGCGAAGCTGCGCGTTCACGGCATCGCGAACCTGCGCGTGGTCGATGCCTCGGTGATGCCGACGCTGATCGGCGGCAACACCAATGCGCCGACGATCATGATTGCCGAACGCGCCGCCGACTGGATGCGCGGGCCGATCACCTTCGACCGCGCGGTGCAGGATGCTAGGGAGCCCGCGAAGAGCCCCGCACCACCAGCTCGCCAGGCAGCAGCAGCTGGCGCGGCGCCTCTTCCAGCCCCCGCAGCCGCTCGATCAGACACGTAG
PROTEIN sequence
Length: 578
MEFDYVIVGGGSGGATLAARLSEDPAVHVCLVEAGGDGRGVLVRAPAGAAAMLSGRPRINNYAYQTVPQPGLNGRRGYQPRGRCLGGSSAINAMLYVRGHPSDYDDWERAGCAGWSYADVLPWFKHAEGNQRGESAMHGAHGPLQVSDQQSPREISEAFVRAAMECGVPRNDDFNDGVQEGAGLYQVTQFHGGDRNGERCSAAAAYLHPVMNNRPNLTVLTGTQAQRVLLDGRRATGVEVRRGGNIDTLHARREVVLCGGAFNSPQLLMLSGIGDPEELGRHGIAVLHALPGVGRNLQDHVDFILSYRTSAKGLPGLGPAGLFNFVKAIPEWRRTGKGLISTPFAEGGAFIKTSPELRRPDLQLHFVISLVDDHARKLHGGFGFSCHACVLRPNGRGDVRLNDADPASAPRIDPRFLSDAQDVALLLRGVKKMREILRAPALAPYRHEELYTANVQTDEELERHIRARADTIYHPVGTCKMGTDAMAVVDAKLRVHGIANLRVVDASVMPTLIGGNTNAPTIMIAERAADWMRGPITFDRAVQDAREPAKSPAPPARQAAAAGAAPLPAPAAARSDT*