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SCNpilot_cont_1000_p_scaffold_376_21

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(21350..23215)

Top 3 Functional Annotations

Value Algorithm Source
LysM domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CFW8_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 72.1
  • Coverage: 624.0
  • Bit_score: 897
  • Evalue 6.80e-258
  • rbh
LysM domain-containing protein {ECO:0000313|EMBL:EJL70561.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.1
  • Coverage: 624.0
  • Bit_score: 897
  • Evalue 9.60e-258
putative LysM domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 32.9
  • Coverage: 286.0
  • Bit_score: 136
  • Evalue 3.80e-29

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1866
ATGCCCAAGCTGCTGTCCGCCACCTACCATCCCAACATCGAAGTCGCCGAGTTCATCTGCGAGGACGGCCGGCACCTGCTGCGCTCGGGAGGAACGCTGCCGTGGCGCATCAACAACCCAGGCGATCTCACGGCGCGGGTGGTCGACGGTGTACCTGCGCCGAAGAAGGCGAAGGGCTACGTCGGGTTTGCCACGACCAGATCGGGCAGGACCTTCCTGATATTTCCCGACGAGGATGCAGGGCGCGCCGAGCTGAAGGCGAATCTCAAGCGCAAGCATGGCGCACGGACCATCCCGGAAGCCATTCCGCATTACGCGCCCGAGCGCGAGAACGACACCGCGAAATACATCGACGACCTGCTCAGGACGAGCGGCATTCCGGCCAGCAGGAGGATCAGCGACTGCACCGATGCCGAGATCGAACGCATCGTCGACAGCATCTCGACGATCGAGGGGTTTCACGCGCGTGCGGAAACGCGAAAAGAGACCTGGGTGGCGGTGAGCAGGATCAACGCGACGGATGGAAGCCAGCCGGTGCCCGATGCGGAAATCATCCTGCAAAGGGAAGGCGGTGAGGAAAGGCTGAAGTCGGATGCCACCGGGCGGTTTCCTCCGGTGATTCATCCGGCGGACAAATCGACCGTACCCGTCAAGGTGATGAGCCCCAAAACCAAGGAGCCGGTGCAGGTCGGAGCTATCGGCGGCGAGACGGGCAAGGACTTCAACCTGCTGGCGAAATTCAGGAAATGGAAGGGGGTGGCTGGTTCGGAGAAACTCAATAGCGCATCACTGGGAAAGAAAACGTCGAAGAGCTATGTGGTTCAACCCGGTGACAGCCTTGGGAAGATTGCGAAGCTTTACCGAACAAGCATTGCTGCAATCAAGGAAGGCAACGGATTGAGAAGCGACCGGATATATCCGGGCGAAGTGCTATCGATCACCGCACGAGACGAAGAAAGATCCCGTGAGCAAAAGGCATCTCCTCCTCCTGTCAAGCCAACTGCACCAACACCTGTAAGTGCAGGAGCAGCTTCGGCAGCGCCACCGAAGCATTCCTCGACTCTTTCACCTGCTCCGCGTAATACGTCCGGATTGGGATCGTCAGATTCAGAGCGGTCAAAAGAAGGAACAGGAAAAATTCTGGCCTTGATCAACCTGTCCCCCAATCGCGCACCTTGGATGCCTATTGCCATTGCAGAAGCGAAACTGAGACGAGGAGAAGTAGAGCTGAAATTGCAAGAAAAAATCAACTACCACATCGAAGTCAACGACGGACTCAAAGCTCTACACGGCGACAGCAATGCATGGTGCGCTGCATTTGTGAACTGGTGCTTGAAACGAGCAAATTACCCAATTGATAACACAGGCCTTCCGAACCACAAGGTGGCAAAAGCCAGGGCTCACGCATTTTATGAAGTTGACGGGATCAAGGGAAAAGAGGAAAAAACAAATAAAAAAATCAGGAACCCGCTTTTCATAGAACTAGAAAAACCAATATACGGGTGCATCGCCATGGTCACCGCCAAATCTGGTCACGGCCGTCACGTTGGCTTTGTTTACGCCAAAAATGGCAAAAACGGACTAATACTTCTTGGAGGAAACCAGAGCAATCAAATCAATTTCTCATACTTCAATATCATGCCGGTTGCTCCCTTTACAACAAGAAATGAGCTCGGAGAAAAAATAAAAATCAAAGGCAACCCCAATCATCTTAAATACTTCATCCCGACTGCATACCACGAGCAAGCCAAAAAGGATTTCCTCGACCCCGGACTCGAAGAAATAGATGCAGACGAAATAAACAAAGAAATGAAAATCGACGTAGTCAAACCCAAAGCCAAACAAGCGCCCCCGTCACTCACCTAA
PROTEIN sequence
Length: 622
MPKLLSATYHPNIEVAEFICEDGRHLLRSGGTLPWRINNPGDLTARVVDGVPAPKKAKGYVGFATTRSGRTFLIFPDEDAGRAELKANLKRKHGARTIPEAIPHYAPERENDTAKYIDDLLRTSGIPASRRISDCTDAEIERIVDSISTIEGFHARAETRKETWVAVSRINATDGSQPVPDAEIILQREGGEERLKSDATGRFPPVIHPADKSTVPVKVMSPKTKEPVQVGAIGGETGKDFNLLAKFRKWKGVAGSEKLNSASLGKKTSKSYVVQPGDSLGKIAKLYRTSIAAIKEGNGLRSDRIYPGEVLSITARDEERSREQKASPPPVKPTAPTPVSAGAASAAPPKHSSTLSPAPRNTSGLGSSDSERSKEGTGKILALINLSPNRAPWMPIAIAEAKLRRGEVELKLQEKINYHIEVNDGLKALHGDSNAWCAAFVNWCLKRANYPIDNTGLPNHKVAKARAHAFYEVDGIKGKEEKTNKKIRNPLFIELEKPIYGCIAMVTAKSGHGRHVGFVYAKNGKNGLILLGGNQSNQINFSYFNIMPVAPFTTRNELGEKIKIKGNPNHLKYFIPTAYHEQAKKDFLDPGLEEIDADEINKEMKIDVVKPKAKQAPPSLT*