ggKbase home page

SCNpilot_cont_1000_p_scaffold_329_12

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(10432..12042)

Top 3 Functional Annotations

Value Algorithm Source
methylcrotonoyL-CoA carboxylase (EC:6.4.1.4); K13778 geranyl-CoA carboxylase beta subunit [EC:6.4.1.5] similarity KEGG
DB: KEGG
  • Identity: 95.5
  • Coverage: 536.0
  • Bit_score: 1019
  • Evalue 4.20e-295
  • rbh
Methylcrotonoyl-CoA carboxylase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2C6_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 95.5
  • Coverage: 536.0
  • Bit_score: 1019
  • Evalue 1.30e-294
  • rbh
Variovorax paradoxus strain MEDvA23 contig_45, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ29253.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.0
  • Coverage: 536.0
  • Bit_score: 1020
  • Evalue 8.50e-295

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1611
ATGCCCGTCATCGAATCCCGGCTGCACGCGGCCAGCGACACCTTCCAGGCCAACCGCGCCGGCATGCTCGCGCTGCTCGAACAGGTGCGGGCGCACGAGGCCCGCGCCGCGGCGGCTTCGGGCGCGTCGGCCGAGCGCTTCGCCAAACGCGGGCAGTTGCTGCCGCGCGAACGCCTCGCGCTGCTGCTGGACACCGGCGCGCCCTTCCTGCCGCTGTCCACGCTCGCCGGCCTCGGCCACGACAACCCCGACCTGTCGAAGAGCGTGCCCGGCGGCGGCCTGCTGTCGGGCATCGGCCAGGTGTCGGGCGTGCGCTGCATGGTCAACGCCTCCGACTCGGGCATCGACGCCGGCGCGCTGCAGCCCATGGGCCTGGACAAGCAGCTGCGCGTGCAGGAGATCGCGCTGGAGAACAAGCTGCCCTACGTGCAGCTGGTGGAGAGCGCCGGCGCCAACCTGATGCAGTACCGCGTGCAGGACTTCGTGCGCGGCGGCAACATCTTCCGCAACCTCGCGCGCCTGTCGGCCGCCGGGCTGCCGGTGGTGACGGTGACGCACGGCTCCTCGACCGCCGGCGGCGCCTACCAGACCGGGCTGTCCGACTACATCGTGATGGTGCGCGACCGCACCCGCGCCTTCCTTGCCGGTCCGCCGCTGCTGAAGGCCGCCACCGGCGAGATCGCCACCGAAGAAGAACTGGGCGGCGCCGTGATGCACACCCACGTCTCGGGCCTGGGCGACTACCTGGCCGAGGACGACCGCGACGCCATCCGCATCGCGCGCTCGATCCTCGGCGGCATCGACTGGGCGCGCGGCGAGGCGCCGCGCCAATTCGCGCCGCCGCGCTACGACGCGCAAGATCTGCTCGGCATCATGCCCAGCGACGGGCGGCGGCCGGTGGACATGCGCGAGGTCATCGCGCGCATCGCGGACGGCTCGGAGTTCCTGGAGTTCAGCGAGCACTACGGCAGCGCCACCGTCTGCGGGCACATCCGGCTCGAAGGGCACGCGGTGGGCATCGTCACCAACAACGGCCCGATCGACTCCGACGGCGCGACCAAGGCCACGCACTTCATCCAGGCCTGCTGCCAGTCGCGCACGCCCATCGTCTACCTGCAGAACATCACCGGCTACATGGTGGGCCGCGCGCACGAGGAGGCCGGCATCATCAAGCACGGCGCCAAGATGATCCAGGCCGTGACCAACGCCAGCGTGCCGCAGATCACGCTGCACTGCGGCGCCTCCTACGGCGCGGGCAACTACGGCATGTGCGGGCGGGGCTTCGCGCCGCGCTTCTGCTTCAGCTGGCCCAACGCGCGCACCGCCGTGATGGGCGGCGAGCAGGCTGCGAAGACCATGGCCATCGTCATGGAGGCCGGCATGGCGCGCAAGGGCGCGGTGGACCACGCGAAGATCGACGCGATGCAACAGCAGATCGTCGAGCGCTTCGACCGGCAGATGAGCGTCTTCACCACCAGCGCGCTGCTGCTGGACGACGGCGTGATCGACCCGCGCGACACGCGCGCGGTGCTGGCCGAGGTTCTTTCCGTATGCCGCGACGCCGATGCGCGCGTGCCGCAACCCATGCAGTTTTCGGTGGCACGGCCATGA
PROTEIN sequence
Length: 537
MPVIESRLHAASDTFQANRAGMLALLEQVRAHEARAAAASGASAERFAKRGQLLPRERLALLLDTGAPFLPLSTLAGLGHDNPDLSKSVPGGGLLSGIGQVSGVRCMVNASDSGIDAGALQPMGLDKQLRVQEIALENKLPYVQLVESAGANLMQYRVQDFVRGGNIFRNLARLSAAGLPVVTVTHGSSTAGGAYQTGLSDYIVMVRDRTRAFLAGPPLLKAATGEIATEEELGGAVMHTHVSGLGDYLAEDDRDAIRIARSILGGIDWARGEAPRQFAPPRYDAQDLLGIMPSDGRRPVDMREVIARIADGSEFLEFSEHYGSATVCGHIRLEGHAVGIVTNNGPIDSDGATKATHFIQACCQSRTPIVYLQNITGYMVGRAHEEAGIIKHGAKMIQAVTNASVPQITLHCGASYGAGNYGMCGRGFAPRFCFSWPNARTAVMGGEQAAKTMAIVMEAGMARKGAVDHAKIDAMQQQIVERFDRQMSVFTTSALLLDDGVIDPRDTRAVLAEVLSVCRDADARVPQPMQFSVARP*