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SCNpilot_cont_1000_p_scaffold_984_28

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(39046..40473)

Top 3 Functional Annotations

Value Algorithm Source
type I secretion protein TolC n=1 Tax=Variovorax paradoxus RepID=UPI00037F6561 similarity UNIREF
DB: UNIREF100
  • Identity: 73.8
  • Coverage: 466.0
  • Bit_score: 641
  • Evalue 8.80e-181
  • rbh
TolC family type I secretion outer membrane protein; K12543 outer membrane protein LapE similarity KEGG
DB: KEGG
  • Identity: 65.7
  • Coverage: 461.0
  • Bit_score: 562
  • Evalue 1.60e-157
  • rbh
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:ADU39199.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.7
  • Coverage: 461.0
  • Bit_score: 562
  • Evalue 7.30e-157

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1428
ATGAACAAGAAACTCAATCATCGACGGCTGGCGGCCGCTTGCCTGCTCGCGGCCTGCGTTCCGGCGTTTGCGCAAAGCAGCTATGGCGACCTGAAGCTGTCACGGCGGCTCGCCCCGAGCGCACTGGCCAAGGAGCTGGGCATTCAGCCCGGTCTCGCACTGCCCGAGGCAGCCGAGACCACGACACCACTGGAACTGACCGACGCCGTGCGCCAGGCGGTGGCGCGTCATCCGTCCATCTCCGATGCCATCGCCATGCTCGCGCAGCAGTCGGGCGGCGTGGATGTGGCGCGCGCCGGCTACTACCCGCTGGTGCGCGTGGGCATGGGCGCCGGCGTCAATGGCGGCGCCTCCGCCACCCAGGGGGGCGGAAAGCGCGGCGTCGCCACGGCATCCGTGTCGCAGATGCTGTACGACTTCGGCAAGGTCTCCGGTGCGGTCGGCCAGTCGGAAGCGCAGGTGCAGCGCCAGCAGGCCACGGTCCTCAAGCAGATCGATGCCATCGCCCAGCAGGCGGCCGAAGCCGTCGTCATGACGCACCGCTACCAGTCGCTCGTCGCCATCGCACAGGAGCAAGTGCAGGCGGTCGAGAAAGTGCTGGAGACCGCGAGGCTGCGCGCCGATGCCGGTCTCAGCACCAAGGCCGACCCGATCCAGGCCGAGTCGCGCGTGGACAGTGCGCGCGCCAACCTGCTGCAGGTGAAGTCGCAGCTGGCGCAGTGGCGCGAACGCCTGGGCACGCTGCTGGGTCGCTCCGTGCCCCCGCGCATGGCGCCGCTGCCGGAGCACCTGGCGAGCGAACTGCGCATCGACCTGCAGCCCGACACCAGCCTCATGCCCGAGGTGCTGGCCGCAGAGGCCGAGCGCCGCGCGGCCACCGCCCAGCTCGAAGTCGCCAAGGCCCAGCGCTACCCCACCATCAGCCTCGATGCTTCCGTCAACCGGCCCATGGGCGGCATGAATTCCGGCGTTCCGGAGCGCAGCGGCGGCTCCCACTCGGTCATGCTGAATCTCTCCAGCGTGCTCTATCAGGGCGGTGCGCTCGAAGCCCAGGTCAATACCGCCATCGCCGCCGAGCAGGCCGCGCGCATGCGCATCGAAACCGCTCGCCTCAATGCCGGCGACCAGGTACGCAACTTCCGCGAGCAGGTCATCGGCGCGCAGGCGCGCCTGGGCGTGCTGGCCGACCGGCGCCGCAGCATCGTCGAGGCGCGCGACCTTTATCGCGAGCAGTACACGCTCGGCACCCGCTCCATCCTCGATCTGCTCAATGCCGAGCAGGAGATCCACCAGGCCGCGGCCGACGAAGAGGCCGTGCTGCACGACCTCTGGGCCAGCCGCATCGGCTACATCGGCGCCACCGGCCAGGCCCGCACGTATTACGGCCTGAACAACACCACCGTCCAAGGGATCGAGTTGCTTCCATGA
PROTEIN sequence
Length: 476
MNKKLNHRRLAAACLLAACVPAFAQSSYGDLKLSRRLAPSALAKELGIQPGLALPEAAETTTPLELTDAVRQAVARHPSISDAIAMLAQQSGGVDVARAGYYPLVRVGMGAGVNGGASATQGGGKRGVATASVSQMLYDFGKVSGAVGQSEAQVQRQQATVLKQIDAIAQQAAEAVVMTHRYQSLVAIAQEQVQAVEKVLETARLRADAGLSTKADPIQAESRVDSARANLLQVKSQLAQWRERLGTLLGRSVPPRMAPLPEHLASELRIDLQPDTSLMPEVLAAEAERRAATAQLEVAKAQRYPTISLDASVNRPMGGMNSGVPERSGGSHSVMLNLSSVLYQGGALEAQVNTAIAAEQAARMRIETARLNAGDQVRNFREQVIGAQARLGVLADRRRSIVEARDLYREQYTLGTRSILDLLNAEQEIHQAAADEEAVLHDLWASRIGYIGATGQARTYYGLNNTTVQGIELLP*