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SCNpilot_cont_1000_p_scaffold_1035_1

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(54..2438)

Top 3 Functional Annotations

Value Algorithm Source
PAS domain S-box n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQP3_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 56.7
  • Coverage: 789.0
  • Bit_score: 866
  • Evalue 2.20e-248
  • rbh
PAS domain S-box {ECO:0000313|EMBL:EJL35389.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.7
  • Coverage: 789.0
  • Bit_score: 866
  • Evalue 3.00e-248
multi-sensor hybrid histidine kinase similarity KEGG
DB: KEGG
  • Identity: 49.5
  • Coverage: 806.0
  • Bit_score: 713
  • Evalue 5.60e-203
  • rbh

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Taxonomy

Novosphingobium sp. AP12 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2385
ATGCCGATGGTCATTTCCGATCCACGGCAGCCGGACAATCCGCTTGTCTTTGTCAACGACGCTTTCTGTCGATTGACCGGCTACAGCCGCGAAGAGCTTGTCGGACGCAACTGCCGATGCTTGCAAGGGCCTGATACGGACAGCGACGCCGTGCGCCAGATCCGCGAGGCCTTGAGGAATCGGCGCTCCATTCAGATCGACGTGCGGAACTACCGAAAGAATGGCGAAGCATTCTGGAACCGGCTGTCCATCGGACCGGTGCATGACAGCGCCGGAGAAGTCATCTATTTCTTTGCCAGCCAGGTGGATGCCACGTTTGAACGGGAACGCCTTCTGGGATTGGAAAGCTCCAATGCCTCGCTTTCCGCGGAGTTGGCCGTCCGGGTCCGTGAAGTGGAAACGGGCGAAGCACGGCTGCGGGCGGCGACCGATGCGGCCGAACTCGGCATCTGGCGCCTGGACCTGACGACGAGTTCGCTTTACGCGTCCGTGCACTGCAAGCGCAATTTTGGCCGCGGCGAATCGTTGCCGTTCACCTACGAGGATCTGCAAGAGGCCGTGCATCCGGACGACCTGCCGCGAATGCGAAGTGCCGTCTTGCGCACCATAGAGACAGGCGATGACTACCGCATCGAATACCGCGTGGTTCGCCCCGACGGCCAACTGGCCTGGGTCCGGATCGTGGGCCGCCTGGAGCGCGACGCCTCAGGTCACCCTCTGTCCATGGCGGGCACCTCCCAGGACATCACCGATGTCATGCTCGCCCTGCGGCGCAACGAATTGCTGGAGATGCTGGACCATGATGTCTACGGAGTGGTACTCGAACCTCACGAGATCGCCTATCGGGCGGCGGCGGCTCTGGGGCGCGTGCTCGACGTCAGCCGCGCTGGCTATGGCGTCGTCGATACCCAAGCCGAGACCATCACCATCGAACGCGACTGGAACGCGCCAGGTATCACGACGATCGCCGGGACGTTACGGTTTCGCGACCACGGCAGCTACATCGAGGATCTGAAGCGCGGCGAAACTGCCATCGTGGAAGATGCGCGGCTGGATCCCCGGACCCGCGATTCCGCCGATGCATTGATAGCGATCAGTGCTCGGTCGTTCATCAACATGCCCGTCAGCGAAGCGGGCGGCCTGGTGGCATTGCTCTATCTCAACCATGCGACGGCCCGCCCCTGGACATCCAAGGAACTGAGCCTCGTGCGCGAAGTTGCGCACCGGACCAGACAGGCGGTGGAGCGTCGCCGCGCCGAACAGGAACTGCGGGCGCTGGCGGAATCGCTGGAGTGCAAGGTGCAGGAACGTACCGCCGAGTTGATGAAGGCCGAAGCCACGCTGCGCCAGTCGCAGAAGATGGAAGCGGTCGGGCAGCTGACAGGCGGCCTGGCGCATGACTTCAACAACCTGCTCGGGGCGATCTCGGGCAGCCTGGAGCTGTTGAAGCGAAAACTCGAAGACAACCCGGGCTTGTCGCGCTACGTGGACATCGGCCAGACCGCGACGAAGCGCGCGGCCGCGCTGACGCACCGACTGCTCGCATTCTCGCGCCAGCAGACCTTGGAGCCCAAAGTCGTCAAGGTCAACCAACTGGTCGGCGGATTCGAGGAACTGGTGCGACGCGCCATCGGGCCGCAAGTCGCTCTGGAAGTGGTCGCCGGCATCGGCATATGGCCGGTGCATGTCGATCCAGGCCAGTTGGAGAACGCGCTGCTGAATCTGTGCATCAACGCGCGGGATGCGATGCCCGGTGGGGGACGGTTGGTCATCGAGACCGCCAACCGCTCGCTCGACGAGCTTGCAGCAAGTGAGCACCAGATGCTTCCCGGCCAGTACGTGTCGATCAGCGTGAGCGACAACGGCAGCGGCATGCCTGTCGACGTGATCGCCCGTGCTTTCGACCCGTTCTTCACGACCAAGCCGATCGGAGTCGGCACGGGGCTGGGGCTTTCGATGGTCTACGGATTCGCCCGTCAATCCGGGGGGCACGCGCGCATCTATTCAGAAGTAGGAACCGGCACCAATGTCTGCATGTACCTGCCTCGTTATGAGGGAGGTGAATGCGCTGCGGACGATCTGCCTGCCTCGAACCAGGTGCCGCAGAGCACGGGTGTGGGCGAGATCGTCCTGGTGGTCGACGACGAAGCTTCCGTGCGGATGCTGATGGTCGAGACATTGGTCGACCTGGGATACCGCGTATTGCATGCGGCGGACGGGCCGCAGGCCGTAGAGCTGTTGCAGGCGAATCGATCCGTCGCTTTGCTTGTCACCGATGTCGGCTTGCCCAAGGGAATGAATGGGCGCCAGGTCGCCGATGCGGGACGGCTCATCAATCCCTCGCTGCGTGTGCTGTTCGGTGAGCGTCCAGTCCAACCATCTTGA
PROTEIN sequence
Length: 795
MPMVISDPRQPDNPLVFVNDAFCRLTGYSREELVGRNCRCLQGPDTDSDAVRQIREALRNRRSIQIDVRNYRKNGEAFWNRLSIGPVHDSAGEVIYFFASQVDATFERERLLGLESSNASLSAELAVRVREVETGEARLRAATDAAELGIWRLDLTTSSLYASVHCKRNFGRGESLPFTYEDLQEAVHPDDLPRMRSAVLRTIETGDDYRIEYRVVRPDGQLAWVRIVGRLERDASGHPLSMAGTSQDITDVMLALRRNELLEMLDHDVYGVVLEPHEIAYRAAAALGRVLDVSRAGYGVVDTQAETITIERDWNAPGITTIAGTLRFRDHGSYIEDLKRGETAIVEDARLDPRTRDSADALIAISARSFINMPVSEAGGLVALLYLNHATARPWTSKELSLVREVAHRTRQAVERRRAEQELRALAESLECKVQERTAELMKAEATLRQSQKMEAVGQLTGGLAHDFNNLLGAISGSLELLKRKLEDNPGLSRYVDIGQTATKRAAALTHRLLAFSRQQTLEPKVVKVNQLVGGFEELVRRAIGPQVALEVVAGIGIWPVHVDPGQLENALLNLCINARDAMPGGGRLVIETANRSLDELAASEHQMLPGQYVSISVSDNGSGMPVDVIARAFDPFFTTKPIGVGTGLGLSMVYGFARQSGGHARIYSEVGTGTNVCMYLPRYEGGECAADDLPASNQVPQSTGVGEIVLVVDDEASVRMLMVETLVDLGYRVLHAADGPQAVELLQANRSVALLVTDVGLPKGMNGRQVADAGRLINPSLRVLFGERPVQPS*