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SCNpilot_cont_1000_p_scaffold_507_15

Organism: SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 10 / 38
Location: comp(21005..21541)

Top 3 Functional Annotations

Value Algorithm Source
Cold shock-like protein CspA id=4896246 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + similarity UNIREF
DB: UNIREF100
  • Identity: 86.5
  • Coverage: 171.0
  • Bit_score: 311
  • Evalue 4.60e-82
  • rbh
cspA; cold shock-like protein CspA; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 43.8
  • Coverage: 162.0
  • Bit_score: 138
  • Evalue 2.20e-30
Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 86.5
  • Coverage: 171.0
  • Bit_score: 311
  • Evalue 6.50e-82

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Taxonomy

R_Alphaproteobacteria_42_30 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGACAAATCAAGCCTTGATGGACGATATCAGTGAAAGTGATATTGAGCGTATTGATGCTAAAGTAAAGTGGTATAATCCTGAAAAGGGTTATGGGTTTTTAGTACCGGATGATGAATCAGCAGACATATTCATGCATTTTTCTGTTTTAGATGCAGCTGGATGCAGACGTGTTGAAGAGGGAGATCGTATTGTTTGTGATATTGGCCCAGGAAGACGGGGACGGCAAGTTCTCCGCGTTTTAGAGGTCAAATTTGTGGCACGCGAGCCACGATTCTCACCAGCCTTTTTAGGACCAAGATCACCTGTCTTTGATCCAGATGCTCTCGAAGAGATTGAAGGGGAGGTCAAATGGTTCAATCCGTTGAAAGGGTTTGGATTTGTTTATCCAGATGATGGAGGGAGAGATATCTTTTTACACGCGTCAGTCCTTCGTGCAGCAGGGTACGAATCTCTTGAACCAGGCGTACGAGTTCTTATTAAAGTTTCAAGCTCCGAGCGGGGTCGTGAGGCAAGAATTCTTAGCGTAATTCGTTAA
PROTEIN sequence
Length: 179
MTNQALMDDISESDIERIDAKVKWYNPEKGYGFLVPDDESADIFMHFSVLDAAGCRRVEEGDRIVCDIGPGRRGRQVLRVLEVKFVAREPRFSPAFLGPRSPVFDPDALEEIEGEVKWFNPLKGFGFVYPDDGGRDIFLHASVLRAAGYESLEPGVRVLIKVSSSERGREARILSVIR*