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SCNpilot_cont_1000_p_scaffold_3249_6

Organism: SCNPILOT_EXPT_300_BF_Nitrosospira_56_20

near complete RP 45 / 55 BSCG 47 / 51 MC: 1 ASCG 10 / 38
Location: 4306..4509

Top 3 Functional Annotations

Value Algorithm Source
Cold shock protein CspD n=1 Tax=Nitrosospira sp. APG3 RepID=M5DP23_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 67.0
  • Bit_score: 139
  • Evalue 9.10e-31
Cold shock protein CspD {ECO:0000313|EMBL:CCU61190.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 67.0
  • Bit_score: 139
  • Evalue 1.30e-30
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family) similarity KEGG
DB: KEGG
  • Identity: 98.5
  • Coverage: 67.0
  • Bit_score: 138
  • Evalue 6.40e-31

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Taxonomy

Nitrosospira lacus → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 204
ATGGCAACAGGTACAGTCAAATGGTTTAACGATTCCAAGGGTTTTGGGTTCATTACCCCGGATGATGGCAGTGAAGATTTATTCGCGCACTTTTCAGCAATCAATATGTCGGGATTCAAAACCCTCAAGGAAGGGCAGAAAGTGAGCTTTGAAGTCACCCAGGGTCCGAAGGGCAAGCAGGCATCCAATATTCAGTCTGCATAA
PROTEIN sequence
Length: 68
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMSGFKTLKEGQKVSFEVTQGPKGKQASNIQSA*