ggKbase home page

SCNpilot_cont_1000_p_scaffold_5235_8

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

near complete RP 51 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 13 / 38 MC: 2
Location: 5207..6592

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.4
  • Coverage: 460.0
  • Bit_score: 788
  • Evalue 4.70e-225
23S rRNA (uracil-5-)-methyltransferase RumA; K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] similarity KEGG
DB: KEGG
  • Identity: 85.0
  • Coverage: 460.0
  • Bit_score: 784
  • Evalue 1.50e-224
  • rbh
23S rRNA methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000365455B similarity UNIREF
DB: UNIREF100
  • Identity: 86.1
  • Coverage: 460.0
  • Bit_score: 795
  • Evalue 2.10e-227
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Stenotrophomonas maltophilia → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1386
ATGTGCATCTGCGACAATGACGCCCCGCAACCCGCAGCTTTCCGCCACGTGGCCCGATCCAGATCCCGCATAGACAAGACCCCGTTCCAGACCGACATCCTCGACCTCAGCCATGACGGCCGCGGCGTCGCCCGCCGTGAAGGCGAGGGCGGCAAGGTGACCTTCGTGGCCGGTGCGTTGCCTGGCGAGACGGTGATGGCCGAGCAGACCGGCAAGAGCCGCCACTTCGACGAGGCGCGCACCGTGGAGGTGCTCACCGCCTCGCCGCACCGGGTGCAGCCGCGTTGCCCGCATTTCGGCGTCTGCGCCGGTTGCGTGCTGCAGCACCTGGACGAGGGCCAGCAGATCGTGGCCAAGCAGCAGGTGCTGATGGACAACCTGACCCGCATCGGCCATGTCAGCCCCGGCACGGTGCTGCCGCCGCTGGTGGGCGACAACTGGGGCTACCGGCGCAAGGGCCGTTTCTCGGTGCGCCGGGTCGAAAAGAAGGACAAGACGCTGGTCGGCTTCCGCGAGCAGGACCCGCGCTTCGTCGCCGACCTGTCGCAGTGCCTGACCGTGATCCCCGAGATCGGTACCCGGGTGGCGGCGCTGTCGGCCTTCATCGAGGGCCTGGACGGCAAGCGCGACATCCCGCAGATCGAATTCATCGGCGGCGATGCCGCCATCGCCCTGACCGTGCGCCACCTGCAGCCGCTGTCCGACGCGGACCGGCAGGCCTGGCAGGCGTTCGGCCAGCAGCATGGCTTTGCCATCTACCTGCAGCCGGGCGGACTGGAGTCGGTGCATTCGTTGTGGCCGGCCGAAGGCGTGCCGCTGTCGTTCGCGCTGCCGCAGTGGGGCGTGGAGCTGGCATTCCGCCCGCTCGACTTCATCCAGGTCAATGCCAAGCTCAACCAGCAGATGATCGCGCATGCGCTGGCGCTGCTGGACGCGCAGCCGGACGAGCGCGTGCTCGACCTGTTCTGCGGTCTGGGCAACTTCACCCTGCCGCTGGCGCGTACCGTGCGCGAGGTGGTGGGCGTGGAGGGCGAGGCCGGGCTGGTGGCGCGGGCGAAGGAAAACGCGCAGCGCAACGGGCTGGACAACGCGCAGTTCTTCGCCGCCGACCTCACCCAGGACCAGCGCGGCGCGCCGTGGATGCGGCAGGGCTTCGACAAGCTGCTGCTCGACCCGCCGCGCTCGGGCGCGATCGACGTGCTGCAGCAGCTGCCGCTCAAACAGTTCAAGCGCATCGTCTACGTCAGCTGCCACCCCGGTTCGCTGGCGCGCGACGCCGGCTACCTGGTCAATGAACAGGGCTTCACCCTGGTGTCGGCCGGTGCGATGGACATGTTCCCGCACACCGCGCACGTGGAAAGCATCGCGGTGTTCGAGAAAAAATGA
PROTEIN sequence
Length: 462
MCICDNDAPQPAAFRHVARSRSRIDKTPFQTDILDLSHDGRGVARREGEGGKVTFVAGALPGETVMAEQTGKSRHFDEARTVEVLTASPHRVQPRCPHFGVCAGCVLQHLDEGQQIVAKQQVLMDNLTRIGHVSPGTVLPPLVGDNWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEIGTRVAALSAFIEGLDGKRDIPQIEFIGGDAAIALTVRHLQPLSDADRQAWQAFGQQHGFAIYLQPGGLESVHSLWPAEGVPLSFALPQWGVELAFRPLDFIQVNAKLNQQMIAHALALLDAQPDERVLDLFCGLGNFTLPLARTVREVVGVEGEAGLVARAKENAQRNGLDNAQFFAADLTQDQRGAPWMRQGFDKLLLDPPRSGAIDVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTLVSAGAMDMFPHTAHVESIAVFEKK*