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SCNpilot_cont_1000_bf_scaffold_41_14

Organism: SCNPILOT_CONT_1000_BF_Sphingobacteriales_50_17

near complete RP 49 / 55 BSCG 50 / 51 ASCG 13 / 38
Location: 17561..18148

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KR60_SOLCM similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 197.0
  • Bit_score: 212
  • Evalue 5.40e-52
Contig58, whole genome shotgun sequence {ECO:0000313|EMBL:KIO76639.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.0
  • Coverage: 187.0
  • Bit_score: 213
  • Evalue 3.40e-52
RNA polymerase sigma-70 factor, Bacteroides expansion family 1 similarity KEGG
DB: KEGG
  • Identity: 54.3
  • Coverage: 197.0
  • Bit_score: 212
  • Evalue 1.70e-52

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Taxonomy

Pedobacter sp. NL19 → Pedobacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 588
ATGGAATTCACCGATGCCACGATCATACAATTGCTGAAACGTCGGGATGAAACAGGATTCGAGCAGGTCTTTAAATTCTATTTTAAGAACCTGTACAGGTACGCCCTTACGATCTTGCAAGACCACGACCAGGCCGAAGACATCGTACAAAACGTCTTCTACAAGCTCTGGGATAAAATGGATTCTCTGCATTTTCAGGATTCCTTAGCCGCCTATCTGTACAGGGCCGTCTACAACGAAAGCCTCAATCATCTCAAACACAAAAAAGTAAAGCTCACTTATCAAACATATATCACCAGGAGTATGAAAGACCAGACAGACGGCGCGCATAGAAAAGTGATGTTCAGCGAGCTGGAACGCCGCCTGCAGACAGCCATCAACGAGCTGCCCGAACAATGCAGGACCATCTTCCAACTCAGCCGTTTTGAAGAGCTCCGCTATCTGGACATCGCCCGGCGACTGGGCATCTCTGTCAAGACAGTGGAGAACCAGATGGGCAAAGCATTAAAAATATTACGGATGAAGTTGATCGACTATCTGCCCTTCATTGCCCTTCTCCTCCTCAACATTTTAAATCATCGCCCTTGA
PROTEIN sequence
Length: 196
MEFTDATIIQLLKRRDETGFEQVFKFYFKNLYRYALTILQDHDQAEDIVQNVFYKLWDKMDSLHFQDSLAAYLYRAVYNESLNHLKHKKVKLTYQTYITRSMKDQTDGAHRKVMFSELERRLQTAINELPEQCRTIFQLSRFEELRYLDIARRLGISVKTVENQMGKALKILRMKLIDYLPFIALLLLNILNHRP*