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SCNpilot_cont_1000_bf_scaffold_47_18

Organism: SCNPILOT_CONT_1000_BF_Burkholderiales_64_18

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(18692..20230)

Top 3 Functional Annotations

Value Algorithm Source
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01010}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.8
  • Coverage: 511.0
  • Bit_score: 955
  • Evalue 2.40e-275
rumA; 23S rRNA 5-methyluridine methyltransferase (EC:2.1.1.35); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] similarity KEGG
DB: KEGG
  • Identity: 73.0
  • Coverage: 466.0
  • Bit_score: 677
  • Evalue 2.90e-192
  • rbh
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00036D03DB similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 486.0
  • Bit_score: 971
  • Evalue 4.00e-280
  • rbh

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Taxonomy

Pandoraea sp. RB-44 → Pandoraea → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1539
GTGACCCGCTCCTCCCGAAATTCCTCACGCGGCCGGCCGGCTGCCGAGCCCGGCATTATCGATATCGAATCGCTCGACATGGAAGCGCGCGGCGTCGGCCGCACCGCGCCCGAGGGCGAGCCGGGTGCACCGGACTACAAGCCCGGCAAGGTGATCTTTGTCGAAGGCGCGCTGCCGGGCGAACGCGTCACCTATCTCAGCTATCGTCGCAAACCCAAATTCGAGCAGGCCGAAGCCATTGATGTGCTGCGCGCCAGCCCGATGCGCGCCAAGCCACAGTGTCCGCACTTCGGCAAGTGCGGTGGGTGCTCGATGCAGCATCTCGAGCCGCGTGCACAAATCGCAATCAAGCAGCGTGTGCTCGAGGACAATCTGGCGCGTCTGGGCAAGGTGAAGGCCGAAGCCATCCTTCGGCCCATTCAGGGGCCAGACTGGGGCTATCGCTTCCGTGCACGTCTGACGGTGCGATACGTCCCGAAAAAGGGGGGCGTGCTCATCGGATTCCATGAGCGCAGGAGCAGCTACGTGGCCGACATGGACTCGTGCGAAGTGCTGCCCCGCCACGTTTCTGACATGCTCGTGCCGTTGCGGCGCCTGGTCGAGTCGCTGTCCATTCGGGAGCGTCTGCCGCAGATCGAACTGGCGATCGGCGCCGAGGTGACGGCGCTCGTGCTGCGTATTCTCGAGCCCCTCACGCCAGCGGACGAGGACATTCTGCGCGCCTTCGCTGAGGCAAATCACGTCCAGTTCTGGGTTCAACCGAAGGGGCCGGACACCGCGGTGCCGTTCTACCCGCTGGACCCGGAATTGCATTACACCCTGCCGGAATATCAGATCCGGATGCCGTTCAAGCCGACGGACTTCACGCAGGTCAACCATCAGATCAACCGTGTGCTCGTGCATCGCGCCTTGCGCTTGCTGGCGCCGGCGTCGCATGAGCGTGTGCTCGATCTGTTCTGCGGCCTGGGGAACTTCACGCTGCCACTGGCCCGTCGCGCCGGCACCGTCATGGGGATCGAGGGCAGCACCGCGCTCACGGAGCGCGCGCTCGCGAATGCGCAACGTAATGGCGTGGCCGAACGGACCGAATTCGCGTGCCGGAACCTGTTCGACATCACGCCGGAGGATATTCGCGCATTGGGTGCGTTTGACCGCTACCTGATCGATCCGCCGCGCGAAGGGGCGCTGGCGGTATCGAAGGCGCTCGCAGAATTGGCGCAGCAGGGCTACGACGGCCTGCCCAAGCGCATCGTCTACGTTTCCTGCAGTCCGGCAACGCTGGCGCGTGACGCGGGCGTGCTCGTGCATGAGGCGGGCTATCGCCTGACGCTGGCCGGGGTGGTGAACATGTTCCCACACACGTCGCACGTCGAGTCGATGGCCGTGTTCGAGCATGACAGCATCGGGCAGCCGTGGGTGCCGACGGTGCGGGTGTCGGCGTCGGATGCTTCCGCCGATCAGGCCGATCAGGGCATTGAGGGCGTTGAGGCGATTGCCGGTGCTACCAGTGGCGACGGCGTGATTCACGACGAGGCCTGA
PROTEIN sequence
Length: 513
VTRSSRNSSRGRPAAEPGIIDIESLDMEARGVGRTAPEGEPGAPDYKPGKVIFVEGALPGERVTYLSYRRKPKFEQAEAIDVLRASPMRAKPQCPHFGKCGGCSMQHLEPRAQIAIKQRVLEDNLARLGKVKAEAILRPIQGPDWGYRFRARLTVRYVPKKGGVLIGFHERRSSYVADMDSCEVLPRHVSDMLVPLRRLVESLSIRERLPQIELAIGAEVTALVLRILEPLTPADEDILRAFAEANHVQFWVQPKGPDTAVPFYPLDPELHYTLPEYQIRMPFKPTDFTQVNHQINRVLVHRALRLLAPASHERVLDLFCGLGNFTLPLARRAGTVMGIEGSTALTERALANAQRNGVAERTEFACRNLFDITPEDIRALGAFDRYLIDPPREGALAVSKALAELAQQGYDGLPKRIVYVSCSPATLARDAGVLVHEAGYRLTLAGVVNMFPHTSHVESMAVFEHDSIGQPWVPTVRVSASDASADQADQGIEGVEAIAGATSGDGVIHDEA*