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SCNpilot_cont_1000_bf_scaffold_47_20

Organism: SCNPILOT_CONT_1000_BF_Burkholderiales_64_18

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(21232..22317)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Pandoraea sp. B-6 RepID=UPI00034615D8 similarity UNIREF
DB: UNIREF100
  • Identity: 99.7
  • Coverage: 361.0
  • Bit_score: 703
  • Evalue 1.40e-199
  • rbh
RNA polymerase sigma factor RpoS {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma S {ECO:0000256|HAMAP-Rule:MF_00959}; Sigma-38 {ECO:0000256|HAMAP-Rule:MF_00959}; TaxID=1380774 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. RB-44.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.8
  • Coverage: 362.0
  • Bit_score: 663
  • Evalue 1.40e-187
rpoS; RNA polymerase, sigma 38 subunit, RpoS; K03087 RNA polymerase nonessential primary-like sigma factor similarity KEGG
DB: KEGG
  • Identity: 73.9
  • Coverage: 371.0
  • Bit_score: 514
  • Evalue 2.30e-143
  • rbh

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Taxonomy

Pandoraea sp. RB-44 → Pandoraea → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1086
ATGCTCAAGAGAAAGCGTCGCACTTCGCAAGAGGAAGACCTCGCTGCCCCGGAGCCCGATCAGGAAATCGACGATCGGCAATCCCGGCAGGACGAGGACGTGGACGACGCTTTCGACGAGCGCGAGGCGGAGGAGGGCGACGACGCGTCGTCGTCCGACGCGGCCGAAGCCGGTGCCGCCGGCCGCAAGCGCAAGCCCGAGGCCGAGGACTTCGGCACGGTGCTGCAGGCCGAACTTACGGCGGATACCGTCCAGCACTATCTCAACCGTATCAGCGTCAAACCGCTGCTCACGCCCGCGGAAGAATTCGAATACTCCACGCGTGCCCAGGCTGGCGAGTTTGCGGCCCGTCAGGTCATGATCGAGCGCAATCTGCGCCTCGTCGTGAGCATTGCCAAGGGCTATCTCAATCGCGGTGTGCCGCTGCTCGATCTGATCGAGGAGGGTAATCTCGGCTTGATGCATGCGATTGAAAAGTTCGACCCGGGTCGCGGGTTCCGTTTTTCAACCTATGCCACGTGGTGGATTCGCCAGAGCATCGAGCGCGCCATCATGAATCAGGCGCGCACCGTACGCTTGCCGGTGCATGTGATTCGCGAACTCAATCAGGTGCTGCGCGCGAAGCGTCATCTTGAAAAGAGTGCGGCGTATGTCGATGGTGGCGAGCAGCGCGACGCAAGTATCGAAGACATCGCCGATTTGACCGGCAAAACGCCCGAAGAGGTGATCGACATCCTCGCGCTCAACGAGCACGTGGCGTCGCTCGACGCGCCGCTGGAAATCGATCCGGGCAGTAGCTTGCTCGATTTGCTCTCGGACGATCACAGTGCGGCCCCGGAGCAGGAGGTGCAGCATCGCGAGCTGGAAGACCTCATGCGCCTTTGGCTCTCGCGCCTGTCCACCAAGCATCGCTACGTCATCGAGCGACGGTTCGGACTTAACCGCGTGGAACCCGCCACGCTGGAAGAACTGGCCGACGAAATGGGACTGACGCGCGAGCGCGTGCGTCAGATCCAGCAAGAGGCGCTCGTCAAGCTCAAGCGCTATTTCGCATCCAATGGGGTGCGCAAGGACGCCGTGCTCTGA
PROTEIN sequence
Length: 362
MLKRKRRTSQEEDLAAPEPDQEIDDRQSRQDEDVDDAFDEREAEEGDDASSSDAAEAGAAGRKRKPEAEDFGTVLQAELTADTVQHYLNRISVKPLLTPAEEFEYSTRAQAGEFAARQVMIERNLRLVVSIAKGYLNRGVPLLDLIEEGNLGLMHAIEKFDPGRGFRFSTYATWWIRQSIERAIMNQARTVRLPVHVIRELNQVLRAKRHLEKSAAYVDGGEQRDASIEDIADLTGKTPEEVIDILALNEHVASLDAPLEIDPGSSLLDLLSDDHSAAPEQEVQHRELEDLMRLWLSRLSTKHRYVIERRFGLNRVEPATLEELADEMGLTRERVRQIQQEALVKLKRYFASNGVRKDAVL*