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AMDSBA1_34

Alias: AMDSBA1_C33

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA1_34_1
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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193..1788
-----------------
DNA (1596bp)
protein (532aa)
ABC transporter
ABC-type transporter ATP-binding protein n=4 Tax=Vibrio RepID=D0HD05_VIBMI (db=UNIREF evalue=1.3e-51 bit_score=209.9 identity=28.5 coverage=94.73684210526315)
ABC TRANSPORTER (ATP-BINDING PROTEIN) (db=HMMPanther db_id=PTHR19211:SF11 from=133 to=508 evalue=7.2e-94)
coiled-coil (db=Coil db_id=coil from=252 to=273 evalue=NA)
AMDSBA1_34_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1961..3511)
-----------------
DNA (1551bp)
protein (517aa)
1-pyrroline-5-carboxylate dehydrogenase
1-pyrroline-5-carboxylate dehydrogenase 1 n=1 Tax=Bacillus halodurans C-125 RepID=ROCA1_BACHD (db=UNIREF evalue=6.5e-157 bit_score=559.7 identity=55.3 coverage=98.8394584139265)
seg (db=Seg db_id=seg from=295 to=313)
ALDEHYDE_DEHYDR_GLU (db=PatternScan db_id=PS00687 from=286 to=293 evalue=0.0 interpro_id=IPR016160 interpro_description=Aldehyde dehydrogenase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA1_34_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3526..3954)
-----------------
DNA (429bp)
protein (143aa)
thioesterase
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=1 to=135 evalue=5.4e-26)
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=3 to=131 evalue=2.9e-20)
(db=HMMPfam db_id=PF03061 from=18 to=99 evalue=4.3e-09 interpro_id=IPR006683 interpro_description=Thioesterase superfamily)
AMDSBA1_34_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4372..5277
-----------------
DNA (906bp)
protein (302aa)
Heat shock protein
Protease HtpX homolog n=1 Tax=Pyrococcus furiosus DSM 3638 RepID=HTPX_PYRFU (db=UNIREF evalue=6.9e-42 bit_score=176.8 identity=37.5 coverage=89.40397350993378)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=189 to=211)
AMDSBA1_34_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5299..5856
-----------------
DNA (558bp)
protein (186aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Methanosaeta concilii GP6 RepID=F4BTS5_METCG (db=UNIREF evalue=2.9e-30 bit_score=137.5 identity=32.1 coverage=98.9247311827957)
Uncharacterized protein {ECO:0000313|EMBL:AEW03713.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4C0_SULAT
AMDSBA1_34_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6037..6756)
-----------------
DNA (720bp)
protein (240aa)
phage shock protein A, PspA
Transcription regulator n=3 Tax=Streptomyces RepID=B5GI34_9ACTO (db=UNIREF evalue=6.9e-53 bit_score=213.0 identity=50.2 coverage=95.83333333333334)
seg (db=Seg db_id=seg from=70 to=85)
seg (db=Seg db_id=seg from=10 to=18)
AMDSBA1_34_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6847..8502)
-----------------
DNA (1656bp)
protein (552aa)
CTP synthase (EC:6.3.4.2)
CTP synthase (EC:6.3.4.2)
CTP synthase n=2 Tax=Acaryochloris RepID=PYRG_ACAM1 (db=UNIREF evalue=9.3e-194 bit_score=682.2 identity=62.6 coverage=95.65217391304348)
AMDSBA1_34_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8590..8883)
-----------------
DNA (294bp)
protein (98aa)
DNA-directed RNA polymerase subunit delta
DNA-directed RNA polymerase delta subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TW65_9FIRM (db=UNIREF evalue=1.7e-26 bit_score=124.0 identity=58.8 coverage=96.93877551020408)
MAINTENANCE OF KILLER 16 (MAK16) PROTEIN-RELATED (db=HMMPanther db_id=PTHR23405 from=11 to=70 evalue=1.6e-09)
seg (db=Seg db_id=seg from=86 to=97)
AMDSBA1_34_9
unknown

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9221..10546
-----------------
DNA (1326bp)
protein (442aa)
seg (db=Seg db_id=seg from=66 to=78)
AMDSBA1_34_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10543..10884
-----------------
DNA (342bp)
protein (114aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=72 to=94)
transmembrane_regions (db=TMHMM db_id=tmhmm from=43 to=65)
transmembrane_regions (db=TMHMM db_id=tmhmm from=22 to=39)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4B3_SULAT
AMDSBA1_34_11
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10834..12489)
-----------------
DNA (1656bp)
protein (552aa)
long-chain fatty-acid-CoA ligase
Long-chain-fatty-acid--CoA ligase (FadD-4) n=1 Tax=Archaeoglobus fulgidus DSM 4304 RepID=O29418_ARCFU (db=UNIREF evalue=2.3e-96 bit_score=358.6 identity=48.2 coverage=64.67391304347827)
seg (db=Seg db_id=seg from=122 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=77 to=99)
AMDSBA1_34_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12491..13243)
-----------------
DNA (753bp)
protein (251aa)
ysiB; enoyl-CoA hydratase/isomerase family protein
Naphthoate synthase n=2 Tax=Halorhabdus RepID=C7NRE5_HALUD (db=UNIREF evalue=8.6e-22 bit_score=109.8 identity=30.8 coverage=94.82071713147411)
seg (db=Seg db_id=seg from=24 to=37)
ENOYL_COA_HYDRATASE (db=PatternScan db_id=PS00166 from=96 to=116 evalue=0.0 interpro_id=IPR018376 interpro_description=Enoyl-CoA hydratase/isomerase, conserved site GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA1_34_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13274..14473)
-----------------
DNA (1200bp)
protein (400aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
Peroxisomal bifunctional enzyme n=2 Tax=Cavia porcellus RepID=ECHP_CAVPO (db=UNIREF evalue=1.5e-47 bit_score=196.1 identity=33.7 coverage=89.5)
3-HYDROXYACYL-COA DEHYROGENASE (db=HMMPanther db_id=PTHR23309 from=49 to=397 evalue=2.3e-83)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=3 to=189 evalue=1.4e-63 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
AMDSBA1_34_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14795..15265
-----------------
DNA (471bp)
protein (157aa)
regulatory protein MarR
Regulatory protein MarR n=2 Tax=Sulfobacillus acidophilus RepID=G8TVR3_9FIRM (db=UNIREF evalue=4.5e-53 bit_score=213.0 identity=73.7 coverage=96.17834394904459)
seg (db=Seg db_id=seg from=83 to=98)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=6 to=142 evalue=2.3e-27)
AMDSBA1_34_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16215..16571
-----------------
DNA (357bp)
protein (119aa)
iscA; iron-sulfur cluster assembly accessory protein
Iron-sulfur cluster assembly accessory protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TKB1_9CHLR (db=UNIREF evalue=3.3e-32 bit_score=143.3 identity=57.3 coverage=97.47899159663865)
HESB (db=PatternScan db_id=PS01152 from=87 to=104 evalue=0.0 interpro_id=IPR017870 interpro_description=FeS cluster insertion, C-terminal, conserved site)
TIGR00049: iron-sulfur cluster assembly acc (db=HMMTigr db_id=TIGR00049 from=2 to=106 evalue=3.0e-54 interpro_id=IPR016092 interpro_description=FeS cluster insertion GO=Molecular Function: structural molecule activity (GO:0005198), Biological Process: iron-sulfur cluster assembly (GO:0016226), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA1_34_16
Methanospirillum hungatei, Methanospirillum, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(16701..18113)
-----------------
DNA (1413bp)
protein (471aa)
general substrate transporter
General substrate transporter n=3 Tax=Acidithiobacillus caldus RepID=F9ZNZ9_ACICS (db=UNIREF evalue=2.7e-85 bit_score=321.6 identity=39.3 coverage=94.26751592356688)
transmembrane_regions (db=TMHMM db_id=tmhmm from=420 to=442)
transmembrane_regions (db=TMHMM db_id=tmhmm from=148 to=170)
AMDSBA1_34_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18247..19416)
-----------------
DNA (1170bp)
protein (390aa)
methyltransferase small
methyltransferase small
Methyltransferase small n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DS77_9BACL (db=UNIREF evalue=1.0e-85 bit_score=322.8 identity=42.5 coverage=99.23076923076923)
AMDSBA1_34_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20037..20804
-----------------
DNA (768bp)
protein (256aa)
Selenide, water dikinase
Selenide, water dikinase n=3 Tax=Eubacterium rectale RepID=SELD_EUBR3 (db=UNIREF evalue=1.1e-35 bit_score=156.0 identity=37.4 coverage=93.359375)
SELENOPHOSPHATE SYNTHASE (db=HMMPanther db_id=PTHR10256 from=1 to=185 evalue=6.6e-29)
PurM C-terminal domain-like (db=superfamily db_id=SSF56042 from=67 to=255 evalue=1.2e-27 interpro_id=IPR010918 interpro_description=AIR synthase-related protein, C-terminal)
AMDSBA1_34_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20788..22245)
-----------------
DNA (1458bp)
protein (486aa)
glutamyl-tRNA synthetase (EC:6.1.1.17)
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase 1 n=3 Tax=Zymomonas mobilis subsp. mobilis RepID=SYE1_ZYMMO (db=UNIREF evalue=9.4e-57 bit_score=226.9 identity=34.1 coverage=90.12345679012346)
AA_TRNA_LIGASE_I (db=PatternScan db_id=PS00178 from=8 to=19 evalue=0.0 interpro_id=IPR001412 interpro_description=Aminoacyl-tRNA synthetase, class I, conserved site GO=Molecular Function: nucleotide binding (GO:0000166), Molecular Function: aminoacyl-tRNA ligase activity (GO:0004812), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: tRNA aminoacylation for protein translation (GO:0006418))
AMDSBA1_34_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23170..23766)
-----------------
DNA (597bp)
protein (199aa)
DNA replication and repair protein RecR
Recombination protein RecR n=7 Tax=Chroococcales RepID=RECR_CYAP8 (db=UNIREF evalue=9.5e-56 bit_score=222.2 identity=54.5 coverage=97.98994974874373)
RECR (db=PatternScan db_id=PS01300 from=57 to=78 evalue=0.0 interpro_id=IPR015967 interpro_description=Recombination protein RecR, conserved site GO=Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
recR: recombination protein RecR (db=HMMTigr db_id=TIGR00615 from=1 to=196 evalue=1.8e-116 interpro_id=IPR000093 interpro_description=DNA recombination protein RecR GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
AMDSBA1_34_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23769..24098)
-----------------
DNA (330bp)
protein (110aa)
hypothetical protein
UPF0133 protein Sulac_0118 n=2 Tax=Sulfobacillus acidophilus RepID=G8TVQ2_9FIRM (db=UNIREF evalue=3.3e-34 bit_score=149.8 identity=70.0 coverage=98.18181818181819)
seg (db=Seg db_id=seg from=8 to=22)
coiled-coil (db=Coil db_id=coil from=8 to=36 evalue=NA)
AMDSBA1_34_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24103..25755)
-----------------
DNA (1653bp)
protein (551aa)
dnaX; DNA polymerase III subunits gamma and tau
Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVD7_9DELT (db=UNIREF evalue=1.2e-12 bit_score=80.5 identity=32.2 coverage=28.13067150635209)
dnaX_nterm: DNA polymerase III, subunit ga (db=HMMTigr db_id=TIGR02397 from=3 to=362 evalue=2.6e-150 interpro_id=IPR012763 interpro_description=DNA polymerase III, subunit gamma/ tau GO=Molecular Function: DNA-directed DNA polymerase activity (GO:0003887), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA replication (GO:0006260), Cellular Component: DNA polymerase III complex (GO:0009360))
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=176 evalue=2.3e-61)
AMDSBA1_34_23
unknown

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comp(27177..27491)
-----------------
DNA (315bp)
protein (105aa)
27177..27491 - ( gc_cont=0.502)
AMDSBA1_34_24
unknown

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comp(28443..28586)
-----------------
DNA (144bp)
protein (48aa)
28443..28586 - ( gc_cont=0.514)
AMDSBA1_34_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29914..30876
-----------------
DNA (963bp)
protein (321aa)
alpha-methylacyl-CoA racemase (EC:5.1.99.4) rbh
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Burkholderia sp. H160 RepID=B5WH73_9BURK (db=UNIREF evalue=1.2e-23 bit_score=116.3 identity=28.4 coverage=92.83489096573209)
CoA-transferase family III (CaiB/BaiF) (db=superfamily db_id=SSF89796 from=1 to=315 evalue=2.4e-83 interpro_id=IPR023606 interpro_description=CoA-transferase family III domain)
ALPHA METHYLACYL-COA RACEMASE (db=HMMPanther db_id=PTHR11837 from=13 to=311 evalue=6.3e-75 interpro_id=IPR003673 interpro_description=CoA-transferase family III GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA1_34_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30913..32076
-----------------
DNA (1164bp)
protein (388aa)
atoB; acetyl-CoA acetyltransferase
atoB; acetyl-CoA acetyltransferase
Predicted protein n=3 Tax=cellular organisms RepID=B9NFG7_POPTR (db=UNIREF evalue=4.1e-103 bit_score=380.6 identity=51.7 coverage=99.48453608247422)
AMDSBA1_34_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32094..32855
-----------------
DNA (762bp)
protein (254aa)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase (EC:1.1.1.178) rbh
3-hydroxy-2-methylbutyryl-CoA dehydrogenase (EC:1.1.1.178) rbh
3-hydroxy-2-methylbutyryl-CoA dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=G8TT14_9FIRM (db=UNIREF evalue=1.9e-101 bit_score=374.4 identity=73.9 coverage=99.21259842519686)
seg (db=Seg db_id=seg from=56 to=72)
AMDSBA1_34_28
unknown

Not on your lists

comp(32815..33012)
-----------------
DNA (198bp)
protein (66aa)
seg (db=Seg db_id=seg from=30 to=47)
AMDSBA1_34_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33664..34524)
-----------------
DNA (861bp)
protein (287aa)
Octanoyltransferase (EC:2.3.1.181)
Octanoyltransferase n=1 Tax=Jannaschia sp. CCS1 RepID=LIPB_JANSC (db=UNIREF evalue=2.3e-31 bit_score=141.7 identity=36.2 coverage=72.12543554006969)
seg (db=Seg db_id=seg from=260 to=271)
LIPB (db=PatternScan db_id=PS01313 from=136 to=151 evalue=0.0 interpro_id=IPR020605 interpro_description=Octanoyltransferase, conserved site GO=Cellular Component: cytoplasm (GO:0005737), Biological Process: lipoate biosynthetic process (GO:0009107), Molecular Function: octanoyltransferase activity (GO:0016415))
AMDSBA1_34_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34759..36117)
-----------------
DNA (1359bp)
protein (453aa)
bkdB; lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=gamma proteobacterium HIMB30 RepID=UPI000262CB7C (db=UNIREF evalue=2.6e-08 bit_score=65.9 identity=23.4 coverage=65.12141280353201)
seg (db=Seg db_id=seg from=197 to=207)
coiled-coil (db=Coil db_id=coil from=23 to=44 evalue=NA)
Displaying items 1-30 of 59 in total

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