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AMDSBA1_41_12

Organism: S._benefaciens_IM1

near complete RP 52 / 55 MC: 14 BSCG 51 / 51 ASCG 0 / 38
Location: comp(10129..10653)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 69.8
  • Coverage: 169.0
  • Bit_score: 244
  • Evalue 2.50e-62
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sulfobacillus acidophilus RepID=G8U074_9FIRM (db=UNIREF evalue=2.7e-62 bit_score=243.8 identity=69.8 coverage=94.85714285714286) similarity UNIREF
DB: UNIREF
  • Identity: 69.8
  • Coverage: 94.86
  • Bit_score: 243
  • Evalue 2.70e-62
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=10 to=165 evalue=3.1e-28 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.10e-28

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Taxonomy

Sulfobacillus acidophilus → Sulfobacillus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 525
ATGCCGTTTACGAACGCCCTAGACGAACGACATTTTACGGAGTTTATGGAAGATTATGGAGACAAGGCATTACGCTACGCGTTCGTTACCCTTCACGTCCGGGGAGATGCGGAAGACGTGACTCAGGAGGCATTTGTCCGATTGTGGCGGCATGCCATGCGCCGAGGCATGGATAATGTCACTCCCGCCCTGTTGTTCCATACTCTGACCAATCTGTGCCGAGACAAAATGCGCTATTACAAACGCCATCCCGAAGATCCCACGGATATTTTGGAATCGACGCATCCGTCTGCAGTTGATGAAATTCCCTTGTTAATAGATGACATGAATGTGCTGCAAGCGGTTATGCAATTAGGTGTCGCCGAACGTCAGTGTATTTTGCTGTTCTATTATATGGACCGCTCCTTAAAGGAGACAGCCACAGCACTGGGTGTCAGCGAACAAGTGGTTAAAACCCGCCTCTACCGTGCACGCCAACATCTGCGTCCCCTTCTTGAACCGACTTGGAAGGAGGGACTGCAATGA
PROTEIN sequence
Length: 175
MPFTNALDERHFTEFMEDYGDKALRYAFVTLHVRGDAEDVTQEAFVRLWRHAMRRGMDNVTPALLFHTLTNLCRDKMRYYKRHPEDPTDILESTHPSAVDEIPLLIDDMNVLQAVMQLGVAERQCILLFYYMDRSLKETATALGVSEQVVKTRLYRARQHLRPLLEPTWKEGLQ*