ggKbase home page

AMDSBA3_14_28 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
LacI family transcriptional regulator similarity KEGG
DB: KEGG
40.0 345.0 230 9.30e-58 rpf:Rpic12D_0944
HTH-type transcriptional repressor PurR n=2 Tax=Haemophilus parasuis RepID=PURR_HAEPS (db=UNIREF evalue=2.6e-42 bit_score=178.3 identity=34.4 coverage=97.91044776119404) similarity UNIREF
DB: UNIREF
34.4 97.91 178 2.60e-42 rpf:Rpic12D_0944
HTH_LACI_1 (db=PatternScan db_id=PS00356 from=4 to=22 evalue=0.0 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: PatternScan
null null null 0.0 rpf:Rpic12D_0944
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=60 to=332 evalue=2.5e-72) iprscan interpro
DB: superfamily
null null null 2.50e-72 rpf:Rpic12D_0944
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=159 to=297 evalue=8.5e-39) iprscan interpro
DB: Gene3D
null null null 8.50e-39 rpf:Rpic12D_0944
(db=HMMPfam db_id=PF00532 from=60 to=309 evalue=1.2e-33 interpro_id=IPR001761 interpro_description=Periplasmic binding protein/LacI transcriptional regulator) iprscan interpro
DB: HMMPfam
null null null 1.20e-33 rpf:Rpic12D_0944
no description (db=HMMSmart db_id=SM00354 from=1 to=71 evalue=1.5e-29 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMSmart
null null null 1.50e-29 rpf:Rpic12D_0944
lambda repressor-like DNA-binding domains (db=superfamily db_id=SSF47413 from=1 to=58 evalue=2.1e-16 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677)) iprscan interpro
DB: superfamily
null null null 2.10e-16 rpf:Rpic12D_0944
(db=HMMPfam db_id=PF00356 from=3 to=48 evalue=7.1e-16 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMPfam
null null null 7.10e-16 rpf:Rpic12D_0944
no description (db=Gene3D db_id=G3DSA:1.10.260.40 from=2 to=59 evalue=3.6e-14 interpro_id=IPR010982 interpro_description=Lambda repressor-like, DNA-binding GO=Molecular Function: DNA binding (GO:0003677)) iprscan interpro
DB: Gene3D
null null null 3.60e-14 rpf:Rpic12D_0944
HTHLACI (db=FPrintScan db_id=PR00036 from=13 to=23 evalue=8.9e-06 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: FPrintScan
null null null 8.90e-06 rpf:Rpic12D_0944
HTHLACI (db=FPrintScan db_id=PR00036 from=3 to=13 evalue=8.9e-06 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: FPrintScan
null null null 8.90e-06 rpf:Rpic12D_0944
HTH_LACI_2 (db=ProfileScan db_id=PS50932 from=2 to=56 evalue=28.731 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: ProfileScan
null null null 2.87e+01 rpf:Rpic12D_0944
Transcriptional regulator, LacI family n=4 Tax=Ralstonia RepID=C6BFI1_RALP1 similarity UNIREF
DB: UNIREF90
40.3 null 231 4.60e-58 rpf:Rpic12D_0944
LacI family transcriptional regulator {ECO:0000313|EMBL:KDE48095.1}; TaxID=1482739 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. CAMR5420.;" UNIPROT
DB: UniProtKB
37.1 334.0 231 2.10e-57 A0A063YSI1_9BACI