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AMDSBA3_14

Alias: AMDSBA3_C13

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_14_1
unknown

Not on your lists

comp(429..536)
-----------------
DNA (108bp)
protein (36aa)
429..536 - ( gc_cont=0.519)
AMDSBA3_14_2
unknown

Not on your lists

comp(647..901)
-----------------
DNA (255bp)
protein (85aa)
647..901 - ( gc_cont=0.553)
AMDSBA3_14_3
Coleofasciculus chthonoplastes, Coleofasciculus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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988..2586
-----------------
DNA (1599bp)
protein (533aa)
ABC transporter
Putative cysteine ABC transporter CydDC n=11 Tax=Moraxella catarrhalis RepID=F1WJG3_MORCA (db=UNIREF evalue=2.0e-07 bit_score=63.2 identity=28.0 coverage=35.0844277673546)
seg (db=Seg db_id=seg from=248 to=258)
ATP-BINDING TRANSPORT PROTEIN-RELATED (db=HMMPanther db_id=PTHR19211 from=133 to=509 evalue=1.5e-96)
AMDSBA3_14_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2937..3971
-----------------
DNA (1035bp)
protein (345aa)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-)
cytochrome bd quinol oxidase subunit 1 (EC:1.10.3.-)
Cytochrome bd quinol oxidase subunit 1 apoprotein n=2 Tax=Sulfobacillus acidophilus RepID=G8TWG0_9FIRM (db=UNIREF evalue=1.2e-127 bit_score=461.8 identity=64.1 coverage=98.26086956521739)
transmembrane_regions (db=TMHMM db_id=tmhmm from=165 to=184)
AMDSBA3_14_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3968..4261
-----------------
DNA (294bp)
protein (98aa)
cydA; cytochrome bd ubiquinol oxidase subunit I
Cytochrome d ubiquinol oxidase subunit I n=2 Tax=Thermococcus RepID=B7R4Z6_9EURY (db=UNIREF evalue=4.1e-12 bit_score=76.3 identity=46.4 coverage=84.6938775510204)
seg (db=Seg db_id=seg from=78 to=88)
transmembrane_regions (db=TMHMM db_id=tmhmm from=48 to=70)
AMDSBA3_14_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4296..4472
-----------------
DNA (177bp)
protein (59aa)
Cytochrome bd quinol oxidase subunit 2 apoprotein n=2 Tax=Sulfobacillus acidophilus RepID=G8TS99_9FIRM (db=UNIREF evalue=8.5e-21 bit_score=104.4 identity=79.3 coverage=96.61016949152543)
cytochrome bd quinol oxidase subunit 2 (EC:1.10.3.-)
transmembrane_regions (db=TMHMM db_id=tmhmm from=2 to=24)
(db=HMMPfam db_id=PF02322 from=3 to=58 evalue=3.3e-23 interpro_id=IPR003317 interpro_description=Cytochrome d ubiquinol oxidase, subunit II GO=Cellular Component: membrane (GO:0016020), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_14_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4494..5309
-----------------
DNA (816bp)
protein (272aa)
cydB; cytochrome d ubiquinol oxidase subunit II
Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P045_9RHOB (db=UNIREF evalue=1.1e-22 bit_score=112.8 identity=33.8 coverage=96.32352941176471)
transmembrane_regions (db=TMHMM db_id=tmhmm from=236 to=258)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
AMDSBA3_14_8
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(5358..5921)
-----------------
DNA (564bp)
protein (188aa)
isochorismatase hydrolase
Isochorismatase n=1 Tax=Bacillus sp. B14905 RepID=A3I7L3_9BACI (db=UNIREF evalue=2.1e-12 bit_score=78.2 identity=32.5 coverage=80.31914893617021)
seg (db=Seg db_id=seg from=11 to=20)
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=7 to=159 evalue=2.9e-38 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA3_14_9
RBG_13_Planctomycetes_63_9_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(6094..6651)
-----------------
DNA (558bp)
protein (186aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YAM2_9BURK (db=UNIREF evalue=2.0e-47 bit_score=194.5 identity=54.9 coverage=85.48387096774194)
transmembrane_regions (db=TMHMM db_id=tmhmm from=110 to=132)
transmembrane_regions (db=TMHMM db_id=tmhmm from=73 to=95)
AMDSBA3_14_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6759..8321)
-----------------
DNA (1563bp)
protein (521aa)
delta-1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
1-pyrroline-5-carboxylate dehydrogenase 1 n=1 Tax=Bacillus halodurans C-125 RepID=ROCA1_BACHD (db=UNIREF evalue=7.7e-158 bit_score=562.8 identity=53.4 coverage=98.0806142034549)
seg (db=Seg db_id=seg from=96 to=107)
ALDEHYDE_DEHYDR_CYS (db=PatternScan db_id=PS00070 from=314 to=325 evalue=0.0 interpro_id=IPR016160 interpro_description=Aldehyde dehydrogenase, conserved site GO=Biological Process: metabolic process (GO:0008152), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_14_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8380..8799)
-----------------
DNA (420bp)
protein (140aa)
thioesterase
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=1 to=136 evalue=3.8e-23)
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=1 to=136 evalue=1.6e-18)
(db=HMMPfam db_id=PF03061 from=20 to=102 evalue=1.5e-05 interpro_id=IPR006683 interpro_description=Thioesterase superfamily)
AMDSBA3_14_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9177..10097
-----------------
DNA (921bp)
protein (307aa)
Heat shock protein
Heat shock protein
Protease HtpX homolog n=2 Tax=Sulfobacillus acidophilus RepID=G8TW71_9FIRM (db=UNIREF evalue=1.7e-136 bit_score=491.1 identity=77.8 coverage=99.0228013029316)
transmembrane_regions (db=TMHMM db_id=tmhmm from=46 to=68)
AMDSBA3_14_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10114..10668
-----------------
DNA (555bp)
protein (185aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX1_ACIFD (db=UNIREF evalue=2.6e-31 bit_score=141.0 identity=38.1 coverage=98.37837837837839)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4C0_SULAT
AMDSBA3_14_14
unknown

Not on your lists

10638..10808
-----------------
DNA (171bp)
protein (57aa)
seg (db=Seg db_id=seg from=28 to=39)
AMDSBA3_14_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10850..11113)
-----------------
DNA (264bp)
protein (88aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TW69_9FIRM (db=UNIREF evalue=2.7e-18 bit_score=96.7 identity=58.6 coverage=96.5909090909091)
seg (db=Seg db_id=seg from=18 to=30)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I4B9_SULAT
AMDSBA3_14_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11110..11826)
-----------------
DNA (717bp)
protein (239aa)
phage shock protein A, PspA rbh
Transcription regulator n=3 Tax=Streptomyces RepID=B5GI34_9ACTO (db=UNIREF evalue=1.2e-57 bit_score=228.8 identity=50.4 coverage=98.74476987447699)
coiled-coil (db=Coil db_id=coil from=163 to=184 evalue=NA)
coiled-coil (db=Coil db_id=coil from=47 to=132 evalue=NA)
AMDSBA3_14_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11922..12170
-----------------
DNA (249bp)
protein (83aa)
hypothetical protein (db=KEGG evalue=1.2e-07 bit_score=60.8 identity=42.4 coverage=96.3855421686747)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TW67_9FIRM (db=UNIREF evalue=1.5e-07 bit_score=60.8 identity=42.4 coverage=96.3855421686747)
(db=HMMPfam db_id=PF07561 from=4 to=27 evalue=6.7e-05 interpro_id=IPR011437 interpro_description=Domain of unknown function DUF1540)
AMDSBA3_14_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12202..13839)
-----------------
DNA (1638bp)
protein (546aa)
pyrG; CTP synthetase
pyrG; CTP synthetase
CTP synthase n=2 Tax=Polynucleobacter necessarius RepID=PYRG_POLNS (db=UNIREF evalue=2.4e-165 bit_score=587.8 identity=56.1 coverage=97.25274725274726)
AMDSBA3_14_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13911..14201)
-----------------
DNA (291bp)
protein (97aa)
DNA-directed RNA polymerase subunit delta
DNA-directed RNA polymerase delta subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TW65_9FIRM (db=UNIREF evalue=6.9e-36 bit_score=155.2 identity=74.2 coverage=97.9381443298969)
MAINTENANCE OF KILLER 16 (MAK16) PROTEIN-RELATED (db=HMMPanther db_id=PTHR23405 from=10 to=69 evalue=2.8e-08)
seg (db=Seg db_id=seg from=79 to=96)
AMDSBA3_14_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14537..15754
-----------------
DNA (1218bp)
protein (406aa)
NLP/P60 protein
Probable endopeptidase YddH n=5 Tax=Bacillus RepID=YDDH_BACSU (db=UNIREF evalue=1.9e-18 bit_score=99.4 identity=32.8 coverage=57.14285714285714)
seg (db=Seg db_id=seg from=52 to=72)
seg (db=Seg db_id=seg from=184 to=195)
AMDSBA3_14_21
unknown

Not on your lists

16003..16329
-----------------
DNA (327bp)
protein (109aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=85 to=107)
transmembrane_regions (db=TMHMM db_id=tmhmm from=64 to=81)
transmembrane_regions (db=TMHMM db_id=tmhmm from=42 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=38)
AMDSBA3_14_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16374..17180)
-----------------
DNA (807bp)
protein (269aa)
ysiB; enoyl-CoA hydratase/isomerase family protein
3-hydroxyisobutyryl-CoA hydrolase 1 n=6 Tax=Arabidopsis RepID=HIBC1_ARATH (db=UNIREF evalue=3.3e-11 bit_score=74.7 identity=31.4 coverage=66.91449814126395)
seg (db=Seg db_id=seg from=207 to=235)
seg (db=Seg db_id=seg from=44 to=63)
AMDSBA3_14_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17152..17463)
-----------------
DNA (312bp)
protein (104aa)
6-phosphogluconate dehydrogenase C-terminal domain-like (db=superfamily db_id=SSF48179 from=7 to=103 evalue=7.9e-24 interpro_id=IPR008927 interpro_description=6-phosphogluconate dehydrogenase, C-terminal-like GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Biological Process: oxidation-reduction process (GO:0055114))
(db=HMMPfam db_id=PF00725 from=12 to=100 evalue=3.0e-20 interpro_id=IPR006108 interpro_description=3-hydroxyacyl-CoA dehydrogenase, C-terminal GO=Molecular Function: 3-hydroxyacyl-CoA dehydrogenase activity (GO:0003857), Biological Process: fatty acid metabolic process (GO:0006631), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
no description (db=Gene3D db_id=G3DSA:1.10.1040.10 from=14 to=102 evalue=4.2e-19 interpro_id=IPR013328 interpro_description=Dehydrogenase, multihelical GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616), Molecular Function: coenzyme binding (GO:0050662), Biological Process: oxidation-reduction process (GO:0055114))
3-HYDROXYACYL-COA DEHYROGENASE (db=HMMPanther db_id=PTHR23309 from=12 to=99 evalue=4.0e-14)
AMDSBA3_14_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17555..18400)
-----------------
DNA (846bp)
protein (282aa)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERU3_9FIRM (db=UNIREF evalue=4.6e-32 bit_score=144.1 identity=33.3 coverage=98.22695035460993)
3-HYDROXYACYL-COA DEHYROGENASE (db=HMMPanther db_id=PTHR23309 from=47 to=281 evalue=3.7e-73)
AMDSBA3_14_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18538..19023
-----------------
DNA (486bp)
protein (162aa)
regulatory protein MarR
Regulatory protein MarR n=2 Tax=Sulfobacillus acidophilus RepID=G8TVR3_9FIRM (db=UNIREF evalue=2.1e-61 bit_score=240.7 identity=76.9 coverage=98.14814814814815)
seg (db=Seg db_id=seg from=72 to=99)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=6 to=142 evalue=4.3e-28)
AMDSBA3_14_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19062..19418
-----------------
DNA (357bp)
protein (119aa)
iscA; iron-sulfur cluster assembly accessory protein
Iron-sulfur cluster assembly accessory protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TKB1_9CHLR (db=UNIREF evalue=1.2e-26 bit_score=124.8 identity=50.4 coverage=97.47899159663865)
HESB (db=PatternScan db_id=PS01152 from=87 to=104 evalue=0.0 interpro_id=IPR017870 interpro_description=FeS cluster insertion, C-terminal, conserved site)
TIGR00049: iron-sulfur cluster assembly acc (db=HMMTigr db_id=TIGR00049 from=2 to=106 evalue=3.1e-50 interpro_id=IPR016092 interpro_description=FeS cluster insertion GO=Molecular Function: structural molecule activity (GO:0005198), Biological Process: iron-sulfur cluster assembly (GO:0016226), Molecular Function: iron-sulfur cluster binding (GO:0051536))
AMDSBA3_14_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19464..20630)
-----------------
DNA (1167bp)
protein (389aa)
methyltransferase small
Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UWU4_9AQUI (db=UNIREF evalue=7.5e-73 bit_score=280.0 identity=38.0 coverage=99.48586118251927)
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=75 to=385 evalue=5.6e-74)
(db=HMMPfam db_id=PF10672 from=165 to=358 evalue=4.6e-24 interpro_id=IPR019614 interpro_description=S-adenosylmethionine-dependent methyltransferase GO=Molecular Function: methyltransferase activity (GO:0008168))
AMDSBA3_14_28
Geobacillus sp. CAMR5420, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20948..21952
-----------------
DNA (1005bp)
protein (335aa)
LacI family transcriptional regulator
HTH-type transcriptional repressor PurR n=2 Tax=Haemophilus parasuis RepID=PURR_HAEPS (db=UNIREF evalue=2.6e-42 bit_score=178.3 identity=34.4 coverage=97.91044776119404)
HTH_LACI_1 (db=PatternScan db_id=PS00356 from=4 to=22 evalue=0.0 interpro_id=IPR000843 interpro_description=Transcription regulator HTH, LacI GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Periplasmic binding protein-like I (db=superfamily db_id=SSF53822 from=60 to=332 evalue=2.5e-72)
AMDSBA3_14_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22043..23779
-----------------
DNA (1737bp)
protein (579aa)
ABC transporter periplasmic protein
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=8.0e-188 bit_score=662.5 identity=54.3 coverage=99.3091537132988)
AMDSBA3_14_30
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23811..24557
-----------------
DNA (747bp)
protein (249aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Thermobispora bispora DSM 43833 RepID=D6Y593_THEBD (db=UNIREF evalue=3.9e-75 bit_score=287.0 identity=55.3 coverage=97.99196787148594)
seg (db=Seg db_id=seg from=106 to=115)
seg (db=Seg db_id=seg from=119 to=130)
Displaying items 1-30 of 60 in total

View Taxonomy