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AMDSBA3_23_21 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase sigma-30 subunit SigH similarity KEGG
DB: KEGG
87.2 226.0 397 3.00e-108 sap:Sulac_0254
RNA polymerase sigma-H factor n=29 Tax=Bacillus RepID=RPSH_BACLI (db=UNIREF evalue=3.7e-80 bit_score=303.5 identity=76.9 coverage=85.84070796460178) similarity UNIREF
DB: UNIREF
76.9 85.84 303 3.70e-80 sap:Sulac_0254
rbh rbh UNIREF
DB: UNIREF
null null null null sap:Sulac_0254
coiled-coil (db=Coil db_id=coil from=184 to=205 evalue=NA) iprscan interpro
DB: Coil
null null null null sap:Sulac_0254
SIGMA70_1 (db=PatternScan db_id=PS00715 from=60 to=73 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 sap:Sulac_0254
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=177 to=204 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565)) iprscan interpro
DB: PatternScan
null null null 0.0 sap:Sulac_0254
RNA polymerase sigma-H factor (db=HMMPIR db_id=PIRSF002939 from=1 to=216 evalue=1.5e-147 interpro_id=IPR016371 interpro_description=RNA polymerase sigma-H factor GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPIR
null null null 1.50e-147 sap:Sulac_0254
spore_sigH: RNA polymerase sigma-H factor (db=HMMTigr db_id=TIGR02859 from=13 to=210 evalue=2.6e-137 interpro_id=IPR014218 interpro_description=RNA polymerase sigma-H type GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO: iprscan interpro
DB: HMMTigr
null null null 2.60e-137 sap:Sulac_0254
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=31 to=209 evalue=7.1e-29 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 7.10e-29 sap:Sulac_0254
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=17 to=106 evalue=1.2e-20 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 1.20e-20 sap:Sulac_0254
(db=HMMPfam db_id=PF04542 from=36 to=105 evalue=4.2e-13 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 4.20e-13 sap:Sulac_0254
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=120 to=211 evalue=3.1e-10 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 3.10e-10 sap:Sulac_0254
(db=HMMPfam db_id=PF08281 from=170 to=205 evalue=6.4e-09 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 6.40e-09 sap:Sulac_0254
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=20 to=108 evalue=8.4e-06) iprscan interpro
DB: Gene3D
null null null 8.40e-06 sap:Sulac_0254
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=152 to=206 evalue=0.0006 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 6.00e-04 sap:Sulac_0254
RNA polymerase, sigma 30 subunit, SigH n=2 Tax=Sulfobacillus acidophilus RepID=G8TWX5_SULAD similarity UNIREF
DB: UNIREF90
87.6 null 398 1.50e-108 sap:Sulac_0254
Uncharacterized protein {ECO:0000313|EMBL:AEW03823.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob UNIPROT
DB: UniProtKB
87.2 226.0 397 1.50e-107 G8TWX5_SULAD