Alias: AMDSBA3_C22
| name | lists | location/seqs | functional annotations | notes |
|---|---|---|---|---|
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AMDSBA3_23_1
unknown
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Not on your lists |
224..508
----------------- DNA (285bp) protein (95aa) |
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
transmembrane_regions (db=TMHMM db_id=tmhmm from=34 to=53)
seg (db=Seg db_id=seg from=2 to=13)
seg (db=Seg db_id=seg from=34 to=42)
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AMDSBA3_23_2
unknown
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Not on your lists |
comp(617..808)
----------------- DNA (192bp) protein (64aa) |
617..808 - ( gc_cont=0.516)
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AMDSBA3_23_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
999..1316
----------------- DNA (318bp) protein (106aa) |
ArsR family transcriptional regulator
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=3 to=94 evalue=2.5e-22)
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=9 to=98 evalue=1.8e-21 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
no description (db=HMMSmart db_id=SM00418 from=10 to=88 evalue=2.1e-21 interpro_id=IPR001845 interpro_description=HTH ArsR-type DNA-binding domain GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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AMDSBA3_23_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
1363..3246
----------------- DNA (1884bp) protein (628aa) |
NADH dehydrogenase (quinone) (EC:1.6.99.5)
Uncharacterized protein n=2 Tax=Thermococcus RepID=I3ZUF4_9EURY (db=UNIREF evalue=2.7e-48 bit_score=199.1 identity=31.0 coverage=71.3375796178344)
transmembrane_regions (db=TMHMM db_id=tmhmm from=359 to=381)
transmembrane_regions (db=TMHMM db_id=tmhmm from=401 to=423)
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AMDSBA3_23_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
3265..4179
----------------- DNA (915bp) protein (305aa) |
formate hydrogenlyase subunit 4
Hydrogenase, membrane subunit 3-like protein (EchB-like) n=1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CW28_9ARCH (db=UNIREF evalue=1.0e-32 bit_score=146.4 identity=32.1 coverage=96.72131147540983)
transmembrane_regions (db=TMHMM db_id=tmhmm from=246 to=268)
transmembrane_regions (db=TMHMM db_id=tmhmm from=278 to=300)
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AMDSBA3_23_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
4176..4799
----------------- DNA (624bp) protein (208aa) |
hypothetical protein
NADH dehydrogenase (Quinone) n=1 Tax=Meiothermus silvanus DSM 9946 RepID=D7BIN0_MEISD (db=UNIREF evalue=1.0e-07 bit_score=62.8 identity=27.4 coverage=85.57692307692307)
seg (db=Seg db_id=seg from=152 to=164)
seg (db=Seg db_id=seg from=4 to=16)
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AMDSBA3_23_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
4806..6122
----------------- DNA (1317bp) protein (439aa) |
hypothetical protein
Putative monovalent cation/H+ antiporter 3 subunit D n=1 Tax=Thermococcus sp. CL1 RepID=I3ZV93_9EURY (db=UNIREF evalue=3.5e-26 bit_score=125.2 identity=29.5 coverage=67.88154897494306)
transmembrane_regions (db=TMHMM db_id=tmhmm from=227 to=249)
transmembrane_regions (db=TMHMM db_id=tmhmm from=261 to=283)
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AMDSBA3_23_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
6124..7572
----------------- DNA (1449bp) protein (483aa) |
NADH-ubiquinone oxidoreductase chain 49kDa
Ni,Fe-hydrogenase III large subunit n=1 Tax=Desulfitobacterium dehalogenans ATCC 51507 RepID=I4AD88_9FIRM (db=UNIREF evalue=2.7e-72 bit_score=278.5 identity=39.6 coverage=89.44099378881988)
seg (db=Seg db_id=seg from=378 to=396)
seg (db=Seg db_id=seg from=292 to=308)
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AMDSBA3_23_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria
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Not on your lists |
7589..8053
----------------- DNA (465bp) protein (155aa) |
NADH ubiquinone oxidoreductase 20 kDa subunit
Formate hydrogenlyase subunit 7 n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0JZE4_9BACT (db=UNIREF evalue=5.2e-25 bit_score=119.8 identity=50.8 coverage=79.35483870967742)
HydA/Nqo6-like (db=superfamily db_id=SSF56770 from=3 to=147 evalue=1.2e-30)
NADH DEHYDROGENASE (db=HMMPanther db_id=PTHR11995 from=4 to=120 evalue=1.8e-29 interpro_id=IPR014406 interpro_description=[NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB GO=Molecular Function: oxidoreductase activity, acting on NADH or NADPH (GO:0016651), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation-reduction process (GO:0055114))
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AMDSBA3_23_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(8149..8613)
----------------- DNA (465bp) protein (155aa) |
carbon monoxide dehydrogenase subunit G
Carbon monoxide dehydrogenase subunit G n=2 Tax=Vulcanisaeta RepID=E1QNC8_VULDI (db=UNIREF evalue=1.6e-10 bit_score=71.6 identity=26.9 coverage=91.61290322580645)
(db=HMMPfam db_id=PF06240 from=6 to=146 evalue=8.5e-22 interpro_id=IPR010419 interpro_description=Carbon monoxide dehydrogenase subunit G)
Bet v1-like (db=superfamily db_id=SSF55961 from=2 to=153 evalue=2.9e-16)
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AMDSBA3_23_11
unknown
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Not on your lists |
comp(9161..9298)
----------------- DNA (138bp) protein (46aa) |
9161..9298 - ( gc_cont=0.630)
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AMDSBA3_23_12
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria
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Not on your lists |
comp(9390..10592)
----------------- DNA (1203bp) protein (401aa) |
major facilitator superfamily protein
Hypothetical multidrug resistance protein n=1 Tax=Picrophilus torridus DSM 9790 RepID=Q6L0X8_PICTO (db=UNIREF evalue=5.9e-73 bit_score=280.4 identity=40.5 coverage=92.76807980049875)
transmembrane_regions (db=TMHMM db_id=tmhmm from=24 to=46)
transmembrane_regions (db=TMHMM db_id=tmhmm from=245 to=267)
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AMDSBA3_23_13
Enhygromyxa salina, Enhygromyxa, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(10813..12681)
----------------- DNA (1869bp) protein (623aa) |
seg (db=Seg db_id=seg from=357 to=366)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=207 to=621 evalue=4.8e-42)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=442 to=620 evalue=1.7e-16)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=196 to=440 evalue=2.8e-11)
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AMDSBA3_23_14
GWC2_OD1_41_9, Yanofskybacteria, Parcubacteria, Bacteria
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Not on your lists |
13313..13813
----------------- DNA (501bp) protein (167aa) |
HTH_MARR_1 (db=PatternScan db_id=PS01117 from=80 to=114 evalue=0.0 interpro_id=IPR023187 interpro_description=Transcriptional regulator MarR-type, conserved site)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=16 to=153 evalue=3.1e-26)
no description (db=HMMSmart db_id=SM00347 from=39 to=141 evalue=1.7e-16 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
(db=HMMPfam db_id=PF01047 from=52 to=105 evalue=2.0e-11 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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AMDSBA3_23_15
Carboxydothermus hydrogenoformans, Carboxydothermus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
13803..14558
----------------- DNA (756bp) protein (252aa) |
ABC transporter ATP-binding protein
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=12 to=232 evalue=9.7e-102)
seg (db=Seg db_id=seg from=154 to=167)
seg (db=Seg db_id=seg from=126 to=139)
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AMDSBA3_23_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria
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Not on your lists |
14555..15748
----------------- DNA (1194bp) protein (398aa) |
hypothetical protein
ABC transporter permease protein n=1 Tax=Shewanella amazonensis SB2B RepID=A1S5M3_SHEAM (db=UNIREF evalue=2.2e-40 bit_score=172.2 identity=30.9 coverage=97.98994974874373)
seg (db=Seg db_id=seg from=255 to=272)
transmembrane_regions (db=TMHMM db_id=tmhmm from=358 to=380)
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AMDSBA3_23_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
16231..17199
----------------- DNA (969bp) protein (323aa) |
beta-lactamase domain-containing protein
Dihydropteroate synthase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLQ3_9GAMM (db=UNIREF evalue=1.5e-42 bit_score=179.1 identity=33.4 coverage=97.52321981424149)
seg (db=Seg db_id=seg from=2 to=14)
Metallo-hydrolase/oxidoreductase (db=superfamily db_id=SSF56281 from=29 to=321 evalue=8.5e-25)
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AMDSBA3_23_18
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria
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Not on your lists |
17407..18387
----------------- DNA (981bp) protein (327aa) |
ATPase
Methanol dehydrogenase regulator n=2 Tax=Candidatus Caldiarchaeum subterraneum RepID=E6NA67_9ARCH (db=UNIREF evalue=1.1e-66 bit_score=259.2 identity=46.0 coverage=90.21406727828746)
Predicted AAA-type ATPase enzymatic complex assembly chaperone, MoxR type (db=HMMPIR db_id=PIRSF002849 from=9 to=322 evalue=3.9e-163 interpro_id=IPR016366 interpro_description=ATPase chaperone, AAA-type, MoxR, predicted)
(db=HMMPfam db_id=PF07726 from=48 to=178 evalue=2.1e-61 interpro_id=IPR011703 interpro_description=ATPase, AAA-3 GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
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AMDSBA3_23_19
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria
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Not on your lists |
18384..19487
----------------- DNA (1104bp) protein (368aa) |
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
(db=HMMPfam db_id=PF01882 from=193 to=270 evalue=4.1e-18 interpro_id=IPR002881 interpro_description=Domain of unknown function DUF58)
hypothetical protein PelgB_14383 n=1 Tax=Paenibacillus elgii B69 RepID=UPI000248DCF8
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AMDSBA3_23_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
19484..21541
----------------- DNA (2058bp) protein (686aa) |
transglutaminase
Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YB12_9GAMM (db=UNIREF evalue=2.2e-19 bit_score=103.2 identity=21.9 coverage=50.72886297376093)
seg (db=Seg db_id=seg from=579 to=597)
seg (db=Seg db_id=seg from=560 to=570)
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AMDSBA3_23_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(21560..22237)
----------------- DNA (678bp) protein (226aa) |
RNA polymerase sigma-30 subunit SigH
RNA polymerase sigma-H factor n=29 Tax=Bacillus RepID=RPSH_BACLI (db=UNIREF evalue=3.7e-80 bit_score=303.5 identity=76.9 coverage=85.84070796460178)
coiled-coil (db=Coil db_id=coil from=184 to=205 evalue=NA)
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AMDSBA3_23_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(22368..23249)
----------------- DNA (882bp) protein (294aa) |
yjfH; TrmH family RNA methyltransferase
rbh
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EVP7_9PROT (db=UNIREF evalue=1.8e-39 bit_score=168.7 identity=41.2 coverage=81.29251700680273)
rRNA_methyl_3: RNA methyltransferase, T (db=HMMTigr db_id=TIGR00186 from=43 to=283 evalue=8.5e-66 interpro_id=IPR004441 interpro_description=RNA methyltransferase TrmH family GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
RNA METHYLTRANSFERASE (db=HMMPanther db_id=PTHR12029 from=90 to=283 evalue=6.8e-57)
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AMDSBA3_23_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(23242..24663)
----------------- DNA (1422bp) protein (474aa) |
cysS; cysteine--tRNA ligase
rbh
Cysteine--tRNA ligase n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=SYC_IGNH4 (db=UNIREF evalue=2.3e-92 bit_score=345.1 identity=41.6 coverage=96.83544303797468)
coiled-coil (db=Coil db_id=coil from=301 to=322 evalue=NA)
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AMDSBA3_23_24
Cyanothece sp. PCC 7822, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria
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Not on your lists |
comp(24940..25677)
----------------- DNA (738bp) protein (246aa) |
cyanophycinase
Cyanophycinase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=D6SL04_9DELT (db=UNIREF evalue=5.7e-18 bit_score=97.1 identity=33.0 coverage=78.45528455284553)
cyanophycinase: cyanophycinase (db=HMMTigr db_id=TIGR02069 from=9 to=238 evalue=1.5e-21 interpro_id=IPR011811 interpro_description=Peptidase S51, cyanophycinase GO=Molecular Function: hydrolase activity (GO:0016787), Biological Process: cellular macromolecule metabolic process (GO:0044260))
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=8 to=217 evalue=2.2e-18)
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AMDSBA3_23_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
25940..27856
----------------- DNA (1917bp) protein (639aa) |
penicillin-binding protein 2 (EC:2.4.1.129)
penicillin-binding protein 2 (EC:2.4.1.129)
Penicillin-binding protein 2 n=2 Tax=Sulfobacillus acidophilus RepID=G8TWX1_9FIRM (db=UNIREF evalue=2.2e-247 bit_score=860.5 identity=65.9 coverage=99.68701095461658)
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AMDSBA3_23_26
unknown
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Not on your lists |
27880..28167
----------------- DNA (288bp) protein (96aa) |
27880..28167 + ( gc_cont=0.545)
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AMDSBA3_23_27
Peptococcaceae bacterium BRH_c4b, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(28094..29488)
----------------- DNA (1395bp) protein (465aa) |
transposase, IS605 OrfB family
Transposase, OrfB family, putative n=1 Tax=Methanosaeta concilii GP6 RepID=F4BX61_METCG (db=UNIREF evalue=2.4e-17 bit_score=95.9 identity=27.7 coverage=49.03225806451613)
seg (db=Seg db_id=seg from=406 to=420)
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AMDSBA3_23_28
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
29538..29954
----------------- DNA (417bp) protein (139aa) |
ISSoc3 transposase
Predicted protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SEV3_ACIJO (db=UNIREF evalue=4.5e-12 bit_score=76.6 identity=62.3 coverage=37.410071942446045)
Transposase IS200-like (db=superfamily db_id=SSF143422 from=4 to=136 evalue=2.5e-41 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
(db=HMMPfam db_id=PF01797 from=14 to=134 evalue=1.2e-40 interpro_id=IPR002686 interpro_description=Transposase IS200-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transposase activity (GO:0004803), Biological Process: transposition, DNA-mediated (GO:0006313))
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AMDSBA3_23_29
Thermoanaerobacter brockii, Thermoanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
comp(30085..30555)
----------------- DNA (471bp) protein (157aa) |
Peroxiredoxin (EC:1.11.1.15)
Truncated thiol peroxidase n=1 Tax=Aeropyrum pernix K1 RepID=Q9YFF0_AERPE (db=UNIREF evalue=4.1e-14 bit_score=83.6 identity=46.8 coverage=58.59872611464968)
Thioredoxin-like (db=superfamily db_id=SSF52833 from=1 to=155 evalue=6.2e-50 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=3 to=155 evalue=1.4e-46)
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AMDSBA3_23_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria
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Not on your lists |
30727..31374
----------------- DNA (648bp) protein (216aa) |
cell wall hydrolase/autolysin
Cell surface protein n=1 Tax=Methanosarcina mazei Go1 RepID=Q8PUP2_METMA (db=UNIREF evalue=6.7e-15 bit_score=86.7 identity=28.4 coverage=96.75925925925925)
seg (db=Seg db_id=seg from=23 to=33)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
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