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AMDSBA3_42_5

Organism: S._acidophilus_IM3

near complete RP 45 / 55 MC: 1 BSCG 50 / 51 ASCG 0 / 38
Location: comp(6708..7355)

Top 3 Functional Annotations

Value Algorithm Source
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=10 to=82 evalue=3.7e-13) iprscan interpro
DB: superfamily
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 3.70e-13
(db=HMMPfam db_id=PF00392 from=16 to=74 evalue=7.7e-13 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMPfam
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 7.70e-13
no description (db=HMMSmart db_id=SM00345 from=17 to=75 evalue=2.0e-12 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMSmart
  • Identity: null
  • Coverage: null
  • Bit_score: null
  • Evalue 2.00e-12

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Taxonomy

Burkholderia sp. TJI49 → Burkholderia → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 648
ATGGGAATGAATGAACTAAACCCAAAAGCGCTTTCGTCGCGTACGCGTGTGTTACGGGAGTGTCGTCAGCGCCTTATCACGGGACAGTGGCCACCCGGCACCATTGTGCAAGAAAAACTGCTCGCCGCTGAACTTGGCGTGAGTAAAACCCCTGTGCGGGAAGCTTTGCAGTACCTTCAATTTGTTGGAGCCGTTACGCCCCATAACCGCATCGGGTATATTGTCGCATCGATTGAACTCAGCGATGTGATTGACGTGTTTCATTTTCGGACGATGCTCGAAGGAGAGTTAGTGCGTCAGGTTGCAGCCTATCCCGATTTTACGTGGCCGTCGCCGCCCTCTCAGATGTCCCCCATTGAACGGGAAATAGAATTTCATCGCCGCCTCTATGCCCAAGTGGCGCCAGTCCGTATGGCCGAAACATTGGCTCCCTTACTGGATGAAACCGCGCGAACCGGTGCCTACGCGAAGCTTTCCGAGGCCCTCTTAACCCCCTTAGAAGCCGAGCACGCCCCCATCATTGCAGCAGTATGCGAGCACGATACCCCGCTCGCCCAAGCCCTGGTGGTTGTCCATCTCAGACACTGGCGCGATTCCCTGCTCGCGGTCTTACGGCAAAAGCTCCGTGAAACCCAGAACATGGTGTAA
PROTEIN sequence
Length: 216
MGMNELNPKALSSRTRVLRECRQRLITGQWPPGTIVQEKLLAAELGVSKTPVREALQYLQFVGAVTPHNRIGYIVASIELSDVIDVFHFRTMLEGELVRQVAAYPDFTWPSPPSQMSPIEREIEFHRRLYAQVAPVRMAETLAPLLDETARTGAYAKLSEALLTPLEAEHAPIIAAVCEHDTPLAQALVVVHLRHWRDSLLAVLRQKLRETQNMV*