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AMDSBA3_42

Alias: AMDSBA3_C41

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA3_42_1
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(620..2518)
-----------------
DNA (1899bp)
protein (633aa)
serine protein kinase
Protein prkA, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9TFM3_RICCO (db=UNIREF evalue=9.6e-94 bit_score=350.1 identity=41.0 coverage=69.98420221169036)
no description (db=HMMSmart db_id=SM00763 from=23 to=374 evalue=1.7e-159 interpro_id=IPR013153 interpro_description=PrkA AAA)
(db=HMMPfam db_id=PF08298 from=24 to=372 evalue=1.8e-113 interpro_id=IPR013153 interpro_description=PrkA AAA)
AMDSBA3_42_2
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(2520..3863)
-----------------
DNA (1344bp)
protein (448aa)
spoVR; stage V sporulation protein R
Stage V sporulation protein R n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BNQ8_9GAMM (db=UNIREF evalue=8.4e-36 bit_score=157.1 identity=28.3 coverage=94.86607142857143)
(db=HMMPfam db_id=PF04293 from=5 to=311 evalue=2.3e-63 interpro_id=IPR007390 interpro_description=Sporulation stage V, protein R)
AMDSBA3_42_3
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3900..4937)
-----------------
DNA (1038bp)
protein (346aa)
sporulation protein YhbH
Sporulation protein YhbH n=1 Tax=Thermaerobacter subterraneus DSM 13965 RepID=E4M5X6_9FIRM (db=UNIREF evalue=3.9e-41 bit_score=174.5 identity=34.1 coverage=82.08092485549133)
(db=HMMPfam db_id=PF04285 from=148 to=340 evalue=4.8e-42 interpro_id=IPR006698 interpro_description=Thermus phage phiYS40, Orf56)
(db=HMMPfam db_id=PF04285 from=5 to=61 evalue=4.9e-05 interpro_id=IPR006698 interpro_description=Thermus phage phiYS40, Orf56)
AMDSBA3_42_4
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5346..6251)
-----------------
DNA (906bp)
protein (302aa)
Ribokinase-like (db=superfamily db_id=SSF53613 from=1 to=290 evalue=4.2e-49)
no description (db=Gene3D db_id=G3DSA:3.40.1190.20 from=5 to=291 evalue=8.9e-41)
(db=HMMPfam db_id=PF00294 from=6 to=284 evalue=2.9e-37 interpro_id=IPR011611 interpro_description=Carbohydrate/purine kinase)
SUGAR KINASE RELATED (db=HMMPanther db_id=PTHR10584 from=7 to=283 evalue=5.3e-35)
AMDSBA3_42_5
Burkholderia sp. TJI49, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6708..7355)
-----------------
DNA (648bp)
protein (216aa)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=10 to=82 evalue=3.7e-13)
(db=HMMPfam db_id=PF00392 from=16 to=74 evalue=7.7e-13 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=HMMSmart db_id=SM00345 from=17 to=75 evalue=2.0e-12 interpro_id=IPR000524 interpro_description=Transcription regulator HTH, GntR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=6 to=78 evalue=5.2e-08 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
AMDSBA3_42_6
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

7713..8462
-----------------
DNA (750bp)
protein (250aa)
LmbE family protein
LmbE family protein n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SA44_9CHLR (db=UNIREF evalue=3.9e-30 bit_score=137.5 identity=38.6 coverage=84.39999999999999)
seg (db=Seg db_id=seg from=178 to=191)
LmbE-like (db=superfamily db_id=SSF102588 from=2 to=219 evalue=9.0e-38 interpro_id=IPR024078 interpro_description=Putative deacetylase LmbE-like domain)
AMDSBA3_42_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8462..10201
-----------------
DNA (1740bp)
protein (580aa)
ABC transporter periplasmic protein
ABC-type transporter, periplasmic subunit n=2 Tax=Sulfobacillus acidophilus RepID=G8TX08_9FIRM (db=UNIREF evalue=1.0e-174 bit_score=619.0 identity=50.7 coverage=97.75862068965517)
seg (db=Seg db_id=seg from=480 to=501)
seg (db=Seg db_id=seg from=140 to=156)
AMDSBA3_42_8
Halobacillus sp. BBL2006, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10304..11254
-----------------
DNA (951bp)
protein (317aa)
hypothetical protein
PfkB domain protein n=1 Tax=Streptomyces bingchenggensis BCW-1 RepID=D7C1R6_STRBB (db=UNIREF evalue=1.3e-35 bit_score=156.0 identity=34.9 coverage=97.47634069400631)
PFKB_KINASES_2 (db=PatternScan db_id=PS00584 from=245 to=258 evalue=0.0 interpro_id=IPR002173 interpro_description=Carbohydrate/puine kinase, PfkB, conserved site GO=Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773))
Ribokinase-like (db=superfamily db_id=SSF53613 from=4 to=302 evalue=2.0e-49)
AMDSBA3_42_9
Halobacillus sp. BBL2006, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

11309..12676
-----------------
DNA (1368bp)
protein (456aa)
6-phospho-beta-glucosidase
Glycoside hydrolase family protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SMG5_9BACL (db=UNIREF evalue=2.0e-48 bit_score=199.1 identity=36.9 coverage=62.93859649122807)
seg (db=Seg db_id=seg from=3 to=16)
GLYCOSYL_HYDROL_F4 (db=PatternScan db_id=PS01324 from=135 to=165 evalue=0.0 interpro_id=IPR019802 interpro_description=Glycoside hydrolase, family 4, conserved site GO=Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553), Biological Process: carbohydrate metabolic process (GO:0005975))
AMDSBA3_42_10
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(12745..13869)
-----------------
DNA (1125bp)
protein (375aa)
FAD dependent oxidoreductase
N-methyltryptophan oxidase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QX65_9EURY (db=UNIREF evalue=2.8e-53 bit_score=214.9 identity=34.5 coverage=99.2)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
(db=HMMPfam db_id=PF01266 from=5 to=354 evalue=4.8e-45 interpro_id=IPR006076 interpro_description=FAD dependent oxidoreductase GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
AMDSBA3_42_11
unknown

Not on your lists

comp(13856..14002)
-----------------
DNA (147bp)
protein (49aa)
13856..14002 - ( gc_cont=0.551)
AMDSBA3_42_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13996..14751)
-----------------
DNA (756bp)
protein (252aa)
short-chain dehydrogenase/reductase SDR
Short chain dehydrogenase n=2 Tax=Glomerellaceae RepID=E3Q4X9_COLGM (db=UNIREF evalue=1.7e-25 bit_score=122.1 identity=36.9 coverage=95.63492063492063)
seg (db=Seg db_id=seg from=148 to=162)
ADH_SHORT (db=PatternScan db_id=PS00061 from=143 to=171 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
AMDSBA3_42_13
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15329..15592
-----------------
DNA (264bp)
protein (88aa)
(db=HMMPfam db_id=PF00376 from=28 to=62 evalue=6.0e-12 interpro_id=IPR000551 interpro_description=Transcription regulator HTH, MerR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
Putative DNA-binding domain (db=superfamily db_id=SSF46955 from=23 to=72 evalue=8.5e-12 interpro_id=IPR009061 interpro_description=DNA binding domain, putative GO=Molecular Function: nucleotide binding (GO:0000166))
no description (db=Gene3D db_id=G3DSA:1.10.1660.10 from=24 to=72 evalue=1.4e-06)
HTH_MERR_2 (db=ProfileScan db_id=PS50937 from=23 to=87 evalue=10.644 interpro_id=IPR000551 interpro_description=Transcription regulator HTH, MerR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA3_42_14
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16733..17536
-----------------
DNA (804bp)
protein (268aa)
short chain alcohol dehydrogenase
ADH_SHORT (db=PatternScan db_id=PS00061 from=143 to=171 evalue=0.0 interpro_id=IPR020904 interpro_description=Short-chain dehydrogenase/reductase, conserved site GO=Molecular Function: oxidoreductase activity (GO:0016491))
SHORT-CHAIN DEHYDROGENASES/REDUCTASE FAMILY MEMBER (db=HMMPanther db_id=PTHR19410 from=3 to=252 evalue=2.2e-91)
3-OXOACYL-(ACYL CARRIER PROTEIN) REDUCTASE-RELATED (db=HMMPanther db_id=PTHR19410:SF85 from=3 to=252 evalue=2.2e-91)
AMDSBA3_42_15
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18426..19709
-----------------
DNA (1284bp)
protein (428aa)
extracellular solute-binding protein
Periplasmic sugar-binding protein of sugar ABC transporter n=1 Tax=Nostoc sp. PCC 7120 RepID=Q8YTJ5_NOSS1 (db=UNIREF evalue=2.5e-29 bit_score=135.6 identity=28.3 coverage=85.04672897196261)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=404 to=427)
AMDSBA3_42_16
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20053..21009
-----------------
DNA (957bp)
protein (319aa)
ABC-type sugar transport system, permease component n=29 Tax=Xylella fastidiosa RepID=F7N8R5_XYLFS (db=UNIREF evalue=1.2e-49 bit_score=202.6 identity=33.6 coverage=89.0282131661442)
transmembrane_regions (db=TMHMM db_id=tmhmm from=220 to=242)
seg (db=Seg db_id=seg from=283 to=296)
seg (db=Seg db_id=seg from=99 to=111)
AMDSBA3_42_17
CG_Elusi_05, Elusimicrobia, Bacteria

Not on your lists

20999..21838
-----------------
DNA (840bp)
protein (280aa)
sugar ABC transporter permease
ABC-type sugar transport system, permease component n=6 Tax=Streptomyces RepID=D9XKC4_9ACTO (db=UNIREF evalue=3.5e-32 bit_score=144.4 identity=31.7 coverage=95.0)
transmembrane_regions (db=TMHMM db_id=tmhmm from=143 to=165)
seg (db=Seg db_id=seg from=14 to=29)
AMDSBA3_42_18
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21912..22841)
-----------------
DNA (930bp)
protein (310aa)
PfkB domain-containing protein
Carbohydrate kinase, PfkB family n=1 Tax=Streptococcus australis ATCC 700641 RepID=E7S9V4_9STRE (db=UNIREF evalue=1.3e-16 bit_score=92.8 identity=29.5 coverage=90.32258064516128)
seg (db=Seg db_id=seg from=291 to=298)
seg (db=Seg db_id=seg from=263 to=286)
AMDSBA3_42_19
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22838..23875)
-----------------
DNA (1038bp)
protein (346aa)
ADP-ribosylation/Crystallin J1
ADP-ribosylation/Crystallin J1
seg (db=Seg db_id=seg from=4 to=22)
seg (db=Seg db_id=seg from=172 to=191)
AMDSBA3_42_20
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23875..24474)
-----------------
DNA (600bp)
protein (200aa)
isochorismatase
Isochorismatase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I3W6_9ACTO (db=UNIREF evalue=2.5e-48 bit_score=197.6 identity=57.5 coverage=86.0)
seg (db=Seg db_id=seg from=156 to=168)
Isochorismatase-like hydrolases (db=superfamily db_id=SSF52499 from=16 to=193 evalue=4.1e-25 interpro_id=IPR000868 interpro_description=Isochorismatase-like GO=Molecular Function: catalytic activity (GO:0003824), Biological Process: metabolic process (GO:0008152))
AMDSBA3_42_21
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24545..27361)
-----------------
DNA (2817bp)
protein (939aa)
hypothetical protein rbh
hypothetical protein rbh
Putative uncharacterized protein n=3 Tax=Escherichia coli RepID=B7NRS0_ECO7I (db=UNIREF evalue=7.2e-154 bit_score=550.4 identity=39.2 coverage=78.27476038338658)
AMDSBA3_42_22
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27354..28829)
-----------------
DNA (1476bp)
protein (492aa)
Permease for cytosine/purines uracil thiamine allantoin n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5I3W5_9ACTO (db=UNIREF evalue=4.3e-174 bit_score=616.7 identity=63.6 coverage=95.52845528455285)
permease for cytosine/purines uracil thiamine allantoin
permease for cytosine/purines uracil thiamine allantoin
transmembrane_regions (db=TMHMM db_id=tmhmm from=392 to=414)
AMDSBA3_42_23
unknown

Not on your lists

comp(28817..28936)
-----------------
DNA (120bp)
protein (40aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
AMDSBA3_42_24
Paenibacillus durus, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29039..29716)
-----------------
DNA (678bp)
protein (226aa)
hypothetical protein
Phosphonate utilization associated transcriptional regulator n=2 Tax=Streptomyces RepID=B5HWG8_9ACTO (db=UNIREF evalue=1.7e-16 bit_score=92.0 identity=31.2 coverage=84.070796460177)
(db=HMMPfam db_id=PF07729 from=82 to=205 evalue=2.6e-22 interpro_id=IPR011711 interpro_description=GntR, C-terminal)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=1 to=102 evalue=4.4e-18)
AMDSBA3_42_25
unknown

Not on your lists

29879..30124
-----------------
DNA (246bp)
protein (82aa)
seg (db=Seg db_id=seg from=48 to=57)
(db=HMMPfam db_id=PF02738 from=31 to=77 evalue=1.7e-06 interpro_id=IPR008274 interpro_description=Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
Molybdenum cofactor-binding domain (db=superfamily db_id=SSF56003 from=31 to=81 evalue=3.8e-06 interpro_id=IPR008274 interpro_description=Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO=Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation-reduction process (GO:0055114))
XANTHINE DEHYDROGENASE (db=HMMPanther db_id=PTHR11908 from=31 to=78 evalue=3.2e-05)
AMDSBA3_42_26
unknown

Not on your lists

30240..30371
-----------------
DNA (132bp)
protein (44aa)
30240..30371 + ( gc_cont=0.561)
Displaying 26 items

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