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SCNpilot_cont_1000_p_scaffold_300_12

Organism: SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(11452..12042)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KUQ6_HALH1 similarity UNIREF
DB: UNIREF100
  • Identity: 35.3
  • Coverage: 167.0
  • Bit_score: 125
  • Evalue 5.20e-26
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 35.3
  • Coverage: 167.0
  • Bit_score: 125
  • Evalue 1.60e-26
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:EJF54038.1}; TaxID=694433 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Saprospira.;" source="Saprospira grandis DSM 2844.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 36.3
  • Coverage: 168.0
  • Bit_score: 125
  • Evalue 7.20e-26

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Taxonomy

Saprospira grandis → Saprospira → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 591
GTGCACTTGGCGGAGCAGTATAACATTTCAGGGAATACTTACCGGGAAACGGGGGAGGTGGCAGACCTAACCACCCTTGTGAGGGACTGTATTGCCCAGAACCGCCTGGCGCAGAGAAGGTTCTACGATCGTTATTCGCCGCTCATATATACTATAATAAAGCGTTATGAATATAACGAGCAGGCAGCGGGAGAGATATTGAACGACGTTTTTTTGAAGGTATTCACCAAGCTGGAGCAATATTCATTTGAGGGTGCGATAGAGGGCTGGATGAGGCGTATCGCCATTAACACGATCACGGACCATATCAGGAAGTATGTGAAGGATAAGCAGGTGGTGCATAATGAATTGCAGGATTATAATGCATATATAGACAGCAGTGCAGTGCAGGGAATGGCCTATAAGGAGCTATTGGACCTGATACACGGCTTGCCGGAGATGCAAAAGGCGGTTTTCAACCTGCACGTATTTGAAAGCCTGCCGCATAAGGACATTGGAACATTATTAAACATAACTGAAAACAACAGCAGGTGGTACCTGAATATGGCCAGGAAAAGCCTGAAGGAAAAAATAAACTCTTTAATGAAGTAA
PROTEIN sequence
Length: 197
VHLAEQYNISGNTYRETGEVADLTTLVRDCIAQNRLAQRRFYDRYSPLIYTIIKRYEYNEQAAGEILNDVFLKVFTKLEQYSFEGAIEGWMRRIAINTITDHIRKYVKDKQVVHNELQDYNAYIDSSAVQGMAYKELLDLIHGLPEMQKAVFNLHVFESLPHKDIGTLLNITENNSRWYLNMARKSLKEKINSLMK*