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SCNpilot_cont_1000_p_scaffold_259_14

Organism: SCNPILOT_CONT_1000_P_Microbacterium_71_138

near complete RP 47 / 55 MC: 2 BSCG 49 / 51 MC: 2 ASCG 10 / 38
Location: 13443..14246

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 267.0
  • Bit_score: 520
  • Evalue 1.40e-144
rsuA; 16S rRNA uridine-516 pseudouridylate synthase; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] similarity KEGG
DB: KEGG
  • Identity: 80.7
  • Coverage: 249.0
  • Bit_score: 393
  • Evalue 7.40e-107
  • rbh
RNA pseudouridine synthase n=1 Tax=Microbacterium paraoxydans RepID=UPI000381B6B8 similarity UNIREF
DB: UNIREF100
  • Identity: 79.3
  • Coverage: 261.0
  • Bit_score: 401
  • Evalue 8.60e-109
  • rbh

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Taxonomy

Microbacterium ginsengisoli → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 804
GTGAGCGGCGCCGATGAGCAGACGGATGCCGCGGGCGTGCGTCTGCAGAAGGTGCTCGCCCACGCGGGCGTCGCGTCGCGCCGTGTCTGCGAAGAGCTGATCGCGAGCGGCCGCGTGCGCGTGAACGGGGTCGTCGTCACGGAGCTCGGCAGCCGCATCGACCCGGAGGTCGACCTGGTCGACGTCGACGGCACCGCGGTGCAGCTCGACCAGTCGAAGCGGTACGTGGTGCTGAACAAGCCGGTCGGCGTCGTCTCGACGATGCGCGACGAGAAGGGCCGCCCCGACCTGCGCCGCTACACCGCCGACTGGGACGAGCGCCTCTACAACGTCGGCCGGCTCGACCAGGACACGAGCGGCCTGCTCGTGCTCACGAACGACGGCGGCCTCGCACACGTCCTTGCGCACCCCTCGTTCGGGGTCACGAAGGTCTACATCGCGAAGGTCGTGGGCACCGTCAGTCCGCAGACGATCGCGCGGCTCACCCGCGGCGTGCAGCTGGAGGACGGCGAGATCGTCGCCGACAAGGCCCGCCTGCTCGACGCGTCCCGTGGCGGGCACGGTGCCTCGTCCCTGGTGGAGCTCACCCTTCACTCAGGGCGCAACCGCATCGTGCGGCGCATGATGGCCGAGGTGGGGCATCCGGTCATCGAGCTGGTGCGCCGCCAGTTCGGACCGCTCCACCTGGGAAGCCTCCCGGTGGGTCGGGCCCGCGAGTTGACTACAGTGGAGAGGGGCGCGCTGCTCACCCTCGCGCGCCAGGGCGCCGATCCCGCGCCCGAAGATTCTCCGGAGCTCCGATGA
PROTEIN sequence
Length: 268
VSGADEQTDAAGVRLQKVLAHAGVASRRVCEELIASGRVRVNGVVVTELGSRIDPEVDLVDVDGTAVQLDQSKRYVVLNKPVGVVSTMRDEKGRPDLRRYTADWDERLYNVGRLDQDTSGLLVLTNDGGLAHVLAHPSFGVTKVYIAKVVGTVSPQTIARLTRGVQLEDGEIVADKARLLDASRGGHGASSLVELTLHSGRNRIVRRMMAEVGHPVIELVRRQFGPLHLGSLPVGRARELTTVERGALLTLARQGADPAPEDSPELR*