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AMDSBA4_25

Alias: AMDSBA4_C24

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
AMDSBA4_25_1
unknown

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comp(315..506)
-----------------
DNA (192bp)
protein (64aa)
315..506 - ( gc_cont=0.458)
AMDSBA4_25_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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741..2054
-----------------
DNA (1314bp)
protein (438aa)
adenylosuccinate lyase
adenylosuccinate lyase
Adenylosuccinate lyase n=1 Tax=Deinococcus radiodurans R1 RepID=PUR8_DEIRA (db=UNIREF evalue=5.8e-106 bit_score=390.2 identity=47.4 coverage=98.17351598173516)
AMDSBA4_25_3
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2054..2755
-----------------
DNA (702bp)
protein (234aa)
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=uncultured marine group II euryarchaeote 37F11 RepID=Q9P9D8_9EURY (db=UNIREF evalue=2.7e-09 bit_score=68.2 identity=24.0 coverage=83.76068376068376)
SAICAR_SYNTHETASE_1 (db=PatternScan db_id=PS01057 from=85 to=99 evalue=0.0 interpro_id=IPR018236 interpro_description=SAICAR synthetase, conserved site GO=Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (GO:0004639), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
SAICAR_SYNTHETASE_2 (db=PatternScan db_id=PS01058 from=172 to=180 evalue=0.0 interpro_id=IPR018236 interpro_description=SAICAR synthetase, conserved site GO=Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (GO:0004639), Biological Process: purine nucleotide biosynthetic process (GO:0006164))
AMDSBA4_25_4
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2752..3009
-----------------
DNA (258bp)
protein (86aa)
phosphoribosylformylglycinamidine synthase PurS
Phosphoribosylformylglycinamidine synthase, purS n=2 Tax=Sulfobacillus acidophilus RepID=G8TXD4_9FIRM (db=UNIREF evalue=3.3e-13 bit_score=79.7 identity=51.2 coverage=91.86046511627907)
(db=HMMPfam db_id=PF02700 from=8 to=80 evalue=1.9e-19 interpro_id=IPR003850 interpro_description=Phosphoribosylformylglycinamidine synthetase, PurS subunit GO=Molecular Function: ligase activity, forming carbon-nitrogen bonds (GO:0016879))
PurS-like (db=superfamily db_id=SSF82697 from=3 to=84 evalue=3.9e-18)
AMDSBA4_25_5
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3095..3700
-----------------
DNA (606bp)
protein (202aa)
purL; phosphoribosylformylglycinamidine synthase I
seg (db=Seg db_id=seg from=67 to=79)
FGAM_synth_I: phosphoribosylformylglycin (db=HMMTigr db_id=TIGR01737 from=1 to=199 evalue=4.7e-73 interpro_id=IPR010075 interpro_description=Phosphoribosylformylglycinamidine synthase I GO=Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
Phosphoribosylformylglycinamidine synthase I (db=HMMPIR db_id=PIRSF001586 from=1 to=196 evalue=8.8e-68 interpro_id=IPR010075 interpro_description=Phosphoribosylformylglycinamidine synthase I GO=Molecular Function: phosphoribosylformylglycinamidine synthase activity (GO:0004642), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
AMDSBA4_25_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3694..5880
-----------------
DNA (2187bp)
protein (729aa)
phosphoribosylformylglycinamidine synthase subunit II (EC:6.3.5.3)
phosphoribosylformylglycinamidine synthase subunit II (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase 2 n=2 Tax=Acaryochloris RepID=PURL_ACAM1 (db=UNIREF evalue=2.5e-106 bit_score=392.1 identity=36.9 coverage=95.33607681755831)
AMDSBA4_25_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5870..7294
-----------------
DNA (1425bp)
protein (475aa)
amidophosphoribosyltransferase (EC:2.4.2.14)
amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=2 Tax=Desulfovibrio RepID=D9YAS2_9DELT (db=UNIREF evalue=2.4e-105 bit_score=388.3 identity=44.3 coverage=95.57894736842105)
AMDSBA4_25_8
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

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7269..8276
-----------------
DNA (1008bp)
protein (336aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Syntrophus aciditrophicus SB RepID=PUR5_SYNAS (db=UNIREF evalue=4.0e-75 bit_score=287.3 identity=43.2 coverage=98.21428571428571)
purM: phosphoribosylformylglycinamidine cycl (db=HMMTigr db_id=TIGR00878 from=5 to=329 evalue=5.0e-153 interpro_id=IPR004733 interpro_description=Phosphoribosylformylglycinamidine cyclo-ligase GO=Molecular Function: phosphoribosylformylglycinamidine cyclo-ligase activity (GO:0004641), Cellular Component: cytoplasm (GO:0005737), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
PHOSPHORIBOSYLAMINE-GLYCINE LIGASE-RELATED (db=HMMPanther db_id=PTHR10520 from=5 to=335 evalue=2.5e-149)
AMDSBA4_25_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8273..8905
-----------------
DNA (633bp)
protein (211aa)
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YYS1_LYNSP (db=UNIREF evalue=2.5e-30 bit_score=137.9 identity=39.4 coverage=84.83412322274881)
PurN: phosphoribosylglycinamide formyltransf (db=HMMTigr db_id=TIGR00639 from=1 to=186 evalue=1.8e-67 interpro_id=IPR004607 interpro_description=Phosphoribosylglycinamide formyltransferase GO=Molecular Function: phosphoribosylglycinamide formyltransferase activity (GO:0004644), Biological Process: 'de novo' IMP biosynthetic process (GO:0006189))
Formyltransferase (db=superfamily db_id=SSF53328 from=1 to=199 evalue=1.1e-63 interpro_id=IPR002376 interpro_description=Formyl transferase, N-terminal GO=Biological Process: biosynthetic process (GO:0009058), Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742))
AMDSBA4_25_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8878..10392
-----------------
DNA (1515bp)
protein (505aa)
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
purH; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
Bifunctional purine biosynthesis protein PurH n=1 Tax=Anaerolinea thermophila UNI-1 RepID=E8N558_ANATU (db=UNIREF evalue=5.6e-105 bit_score=387.1 identity=43.8 coverage=98.41584158415841)
AMDSBA4_25_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10407..11663
-----------------
DNA (1257bp)
protein (419aa)
purD; phosphoribosylamine--glycine ligase
Phosphoribosylamine--glycine ligase n=1 Tax=Chlorobium tepidum TLS RepID=PUR2_CHLTE (db=UNIREF evalue=1.2e-65 bit_score=256.1 identity=36.9 coverage=97.61336515513126)
(db=HMMPfam db_id=PF01071 from=102 to=293 evalue=3.5e-53 interpro_id=IPR020561 interpro_description=Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain)
seg (db=Seg db_id=seg from=318 to=335)
AMDSBA4_25_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11714..12325
-----------------
DNA (612bp)
protein (204aa)
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXC6_9FIRM (db=UNIREF evalue=4.5e-53 bit_score=213.4 identity=58.5 coverage=90.19607843137256)
hypothetical protein
seg (db=Seg db_id=seg from=158 to=203)
seg (db=Seg db_id=seg from=34 to=65)
AMDSBA4_25_13
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12392..12685
-----------------
DNA (294bp)
protein (98aa)
TrpR-like protein YerC/YecD
Putative uncharacterized protein n=1 Tax=[Bacteroides] pectinophilus ATCC 43243 RepID=B7ANL6_9FIRM (db=UNIREF evalue=1.1e-20 bit_score=104.8 identity=57.7 coverage=97.95918367346938)
yecD_yerC: TrpR homolog YerC/YecD (db=HMMTigr db_id=TIGR02531 from=6 to=93 evalue=7.5e-44 interpro_id=IPR013368 interpro_description=TrpR homologue YerC/YecD)
(db=HMMPfam db_id=PF01371 from=9 to=93 evalue=1.5e-27 interpro_id=IPR000831 interpro_description=Trp repressor GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA4_25_14
unknown

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12783..13103
-----------------
DNA (321bp)
protein (107aa)
12783..13103 + ( gc_cont=0.558)
AMDSBA4_25_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13163..15298
-----------------
DNA (2136bp)
protein (712aa)
UvrD/REP helicase
UvrD/REP helicase
ATP-dependent DNA helicase PcrA n=1 Tax=Prevotella salivae DSM 15606 RepID=E6MKV0_9BACT (db=UNIREF evalue=3.1e-125 bit_score=454.9 identity=41.0 coverage=89.18539325842697)
AMDSBA4_25_16
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15300..17354
-----------------
DNA (2055bp)
protein (685aa)
ligA; NAD-dependent DNA ligase
DNA ligase n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=DNLJ_PELPB (db=UNIREF evalue=2.8e-139 bit_score=501.5 identity=41.2 coverage=95.76642335766424)
seg (db=Seg db_id=seg from=622 to=628)
AMDSBA4_25_17
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17486..18478
-----------------
DNA (993bp)
protein (331aa)
oligopeptide/dipeptide ABC transporter ATPase (EC:3.6.3.24)
oligopeptide/dipeptide ABC transporter ATPase (EC:3.6.3.24)
Oligopeptide ABC transporter, ATP-binding protein AppD n=4 Tax=Desulfitobacterium RepID=G9XQ10_DESHA (db=UNIREF evalue=4.8e-97 bit_score=360.1 identity=57.1 coverage=96.97885196374622)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=6 to=326 evalue=1.9e-165)
AMDSBA4_25_18
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18475..19470
-----------------
DNA (996bp)
protein (332aa)
oligopeptide ABC transporter ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit n=1 Tax=Halobacterium sp. DL1 RepID=G4II58_9EURY (db=UNIREF evalue=4.3e-93 bit_score=347.1 identity=54.6 coverage=91.86746987951807)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=16 to=330 evalue=2.2e-173)
AMDSBA4_25_19
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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19695..20642
-----------------
DNA (948bp)
protein (316aa)
K+ transport system, NAD-binding component
Predicted potassium channel protein n=1 Tax=Methanothermobacter marburgensis str. Marburg RepID=D9PU15_METTM (db=UNIREF evalue=2.9e-22 bit_score=111.7 identity=27.4 coverage=97.46835443037975)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=79)
seg (db=Seg db_id=seg from=166 to=176)
AMDSBA4_25_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20991..21290
-----------------
DNA (300bp)
protein (100aa)
glutamyl-tRNA(Gln) amidotransferase subunit C
Probable Glutamyl-tRNA(Gln) amidotransferase subunit C n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F220_SORC5 (db=UNIREF evalue=1.8e-10 bit_score=70.9 identity=41.1 coverage=94.0)
Glu-tRNAGln amidotransferase C subunit (db=superfamily db_id=SSF141000 from=2 to=93 evalue=1.7e-27)
gatC: glutamyl-tRNA(Gln) and/or aspartyl-tRN (db=HMMTigr db_id=TIGR00135 from=3 to=95 evalue=3.5e-23 interpro_id=IPR003837 interpro_description=Glu-tRNAGln amidotransferase, C subunit GO=Biological Process: regulation of translational fidelity (GO:0006450))
AMDSBA4_25_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21290..22753
-----------------
DNA (1464bp)
protein (488aa)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
glutamyl-tRNA(Gln) amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=31 Tax=Corynebacterium RepID=GATA_CORDI (db=UNIREF evalue=1.2e-123 bit_score=449.1 identity=49.6 coverage=96.51639344262296)
AMDSBA4_25_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22753..24213
-----------------
DNA (1461bp)
protein (487aa)
gatB; glutamyl-tRNA(Gln) amidotransferase subunit B
gatB; glutamyl-tRNA(Gln) amidotransferase subunit B
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Leifsonia xyli subsp. xyli str. CTCB07 RepID=GATB_LEIXX (db=UNIREF evalue=7.6e-99 bit_score=366.7 identity=42.5 coverage=97.5359342915811)
AMDSBA4_25_23
CSP1_5_NC10, NC10, Bacteria

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24206..25129
-----------------
DNA (924bp)
protein (308aa)
hypothetical protein
LD-carboxypeptidase superfamily n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WIX3_9SYNE (db=UNIREF evalue=1.7e-24 bit_score=119.0 identity=28.0 coverage=97.72727272727273)
(db=HMMPfam db_id=PF02016 from=14 to=291 evalue=9.1e-76 interpro_id=IPR003507 interpro_description=Peptidase S66, LD-carboxypeptidase A)
Class I glutamine amidotransferase-like (db=superfamily db_id=SSF52317 from=2 to=148 evalue=7.4e-42)
AMDSBA4_25_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25122..26489
-----------------
DNA (1368bp)
protein (456aa)
RNA methyltransferase
Uncharacterized RNA methyltransferase BMEI1496 n=55 Tax=Brucellaceae RepID=Y1496_BRUME (db=UNIREF evalue=4.7e-10 bit_score=71.6 identity=30.8 coverage=34.42982456140351)
seg (db=Seg db_id=seg from=270 to=281)
TRMA_1 (db=PatternScan db_id=PS01230 from=377 to=408 evalue=0.0 interpro_id=IPR010280 interpro_description=(Uracil-5)-methyltransferase GO=Biological Process: RNA processing (GO:0006396), Molecular Function: RNA methyltransferase activity (GO:0008173))
AMDSBA4_25_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26448..27884)
-----------------
DNA (1437bp)
protein (479aa)
amino acid permease-associated protein
Amino acid permease n=6 Tax=Lactobacillus salivarius RepID=Q1WUT2_LACS1 (db=UNIREF evalue=3.0e-63 bit_score=248.4 identity=29.7 coverage=90.81419624217119)
transmembrane_regions (db=TMHMM db_id=tmhmm from=174 to=196)
transmembrane_regions (db=TMHMM db_id=tmhmm from=414 to=436)
AMDSBA4_25_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27946..28515
-----------------
DNA (570bp)
protein (190aa)
yciA; thioesterase superfamily protein
Thioesterase superfamily protein n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BL37_9BACT (db=UNIREF evalue=5.4e-24 bit_score=116.7 identity=43.5 coverage=72.10526315789474)
seg (db=Seg db_id=seg from=175 to=188)
CYTOSOLIC ACYL COENZYME A THIOESTER HYDROLASE (db=HMMPanther db_id=PTHR11049 from=33 to=188 evalue=5.0e-53)
AMDSBA4_25_27
unknown

Not on your lists

comp(28452..29537)
-----------------
DNA (1086bp)
protein (362aa)
seg (db=Seg db_id=seg from=125 to=137)
seg (db=Seg db_id=seg from=151 to=163)
seg (db=Seg db_id=seg from=344 to=357)
AMDSBA4_25_28
unknown

Not on your lists

29817..30188
-----------------
DNA (372bp)
protein (124aa)
29817..30188 + ( gc_cont=0.497)
AMDSBA4_25_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30471..30704
-----------------
DNA (234bp)
protein (78aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=F8IB79_SULAT (db=UNIREF evalue=1.0e-21 bit_score=107.8 identity=66.2 coverage=97.43589743589743)
transmembrane_regions (db=TMHMM db_id=tmhmm from=15 to=37)
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
AMDSBA4_25_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30691..31476
-----------------
DNA (786bp)
protein (262aa)
seg (db=Seg db_id=seg from=129 to=162)
seg (db=Seg db_id=seg from=90 to=104)
seg (db=Seg db_id=seg from=52 to=63)
transmembrane_regions (db=TMHMM db_id=tmhmm from=197 to=219)
Displaying items 1-30 of 42 in total

View Taxonomy