ggKbase home page
Advanced Search
Search Help

AMDSBA4_51_20 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
rpoA; DNA-directed RNA polymerase subunit alpha similarity KEGG
DB: KEGG 		85.7 315.0 548 1.50e-153 say:TPY_0350
DNA-directed RNA polymerase subunit alpha n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=RPOA_ALKMQ (db=UNIREF evalue=9.0e-109 bit_score=399.1 identity=62.5 coverage=99.36708860759494) similarity UNIREF
DB: UNIREF 		62.5 99.37 399 9.00e-109 say:TPY_0350
seg (db=Seg db_id=seg from=109 to=122) iprscan interpro
DB: Seg 		null null null null say:TPY_0350
seg (db=Seg db_id=seg from=291 to=308) iprscan interpro
DB: Seg 		null null null null say:TPY_0350
rbh rbh UNIREF
DB: UNIREF 		null null null null say:TPY_0350
rpoA: DNA-directed RNA polymerase, alpha sub (db=HMMTigr db_id=TIGR02027 from=20 to=313 evalue=8.0e-162 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: HMMTigr 		null null null 8.00e-162 say:TPY_0350
no description (db=HMMSmart db_id=SM00662 from=20 to=227 evalue=3.0e-81 interpro_id=IPR011263 interpro_description=DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: HMMSmart 		null null null 3.00e-81 say:TPY_0350
Insert subdomain of RNA polymerase alpha subunit (db=superfamily db_id=SSF56553 from=50 to=171 evalue=3.1e-45 interpro_id=IPR011262 interpro_description=DNA-directed RNA polymerase, insert domain GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: protein dimerization activity (GO:0046983)) iprscan interpro
DB: superfamily 		null null null 2.80e-45 say:TPY_0350
no description (db=Gene3D db_id=G3DSA:2.170.120.12 from=50 to=170 evalue=4.1e-41 interpro_id=IPR011262 interpro_description=DNA-directed RNA polymerase, insert domain GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: protein dimerization activity (GO:0046983)) iprscan interpro
DB: Gene3D 		null null null 4.10e-41 say:TPY_0350
RBP11-like subunits of RNA polymerase (db=superfamily db_id=SSF55257 from=1 to=228 evalue=6.5e-32 interpro_id=IPR009025 interpro_description=DNA-directed RNA polymerase, RBP11-like GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: superfamily 		null null null 6.50e-32 say:TPY_0350
(db=HMMPfam db_id=PF03118 from=242 to=303 evalue=1.2e-29 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: HMMPfam 		null null null 1.20e-29 say:TPY_0350
C-terminal domain of RNA polymerase alpha subunit (db=superfamily db_id=SSF47789 from=245 to=311 evalue=9.4e-24 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: superfamily 		null null null 9.40e-24 say:TPY_0350
(db=HMMPfam db_id=PF01193 from=26 to=225 evalue=5.7e-23 interpro_id=IPR011261 interpro_description=DNA-directed RNA polymerase, dimerisation GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: protein dimerization activity (GO:0046983)) iprscan interpro
DB: HMMPfam 		null null null 5.70e-23 say:TPY_0350
no description (db=Gene3D db_id=G3DSA:1.10.150.20 from=242 to=310 evalue=8.2e-23) iprscan interpro
DB: Gene3D 		null null null 8.20e-23 say:TPY_0350
(db=HMMPfam db_id=PF01000 from=59 to=152 evalue=1.3e-18 interpro_id=IPR011262 interpro_description=DNA-directed RNA polymerase, insert domain GO=Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: protein dimerization activity (GO:0046983)) iprscan interpro
DB: HMMPfam 		null null null 1.30e-18 say:TPY_0350
RPOA_BACSK_Q5WLN5; (db=BlastProDom db_id=PD001179 from=253 to=290 evalue=2.0e-12 interpro_id=IPR011260 interpro_description=RNA polymerase, alpha subunit, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: BlastProDom 		null null null 2.00e-12 say:TPY_0350
no description (db=Gene3D db_id=G3DSA:3.30.1360.10 from=1 to=50 evalue=0.00064) iprscan interpro
DB: Gene3D 		null null null 6.40e-04 say:TPY_0350
RNApol_bact_RpoA (db=HAMAP db_id=MF_00059 from=1 to=313 evalue=36.561 interpro_id=IPR011773 interpro_description=DNA-directed RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: HAMAP 		null null null 3.66e+01 say:TPY_0350
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase UNIPROT
DB: UniProtKB 		85.7 315.0 548 7.20e-153 F8I5R1_SULAT