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AMDSBA4_51

Alias: AMDSBA4_C50

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Displaying items 1-30 of 40 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
AMDSBA4_51_1
unknown

Not on your lists

2..256
DNA (255bp) protein (85aa)
2..256 + ( gc_cont=0.475)
AMDSBA4_51_2
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(613..1041)
DNA (429bp) protein (143aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXJ6_9FIRM (db=UNIREF evalue=3.6e-41 bit_score=173.3 identity=57.2 coverage=95.8041958041958)
Uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXJ6_SULAD
Uncharacterized protein {ECO:0000313|EMBL:AEW03895.1}; TaxID=679936 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" source="Sulfob
AMDSBA4_51_3
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

1226..2146
DNA (921bp) protein (307aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein n=1 Tax=Desulfurococcus mucosus DSM 2162 RepID=E8R9N3_DESM0 (db=UNIREF evalue=6.0e-25 bit_score=120.6 identity=32.2 coverage=84.69055374592834)
seg (db=Seg db_id=seg from=247 to=259)
2-HYDROXYACID DEHYDROGENASE (db=HMMPanther db_id=PTHR10996 from=59 to=301 evalue=4.8e-67)
AMDSBA4_51_4
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(2143..2952)
DNA (810bp) protein (270aa)
ABC transporter
ABC-type multidrug transport system, permease component n=1 Tax=Mesotoga prima MesG1.Ag.4.2 RepID=I2F6X7_9THEM (db=UNIREF evalue=1.1e-62 bit_score=245.7 identity=43.8 coverage=98.51851851851852)
transmembrane_regions (db=TMHMM db_id=tmhmm from=25 to=47)
transmembrane_regions (db=TMHMM db_id=tmhmm from=57 to=76)
AMDSBA4_51_5
Deinococcus geothermalis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(2999..3817)
DNA (819bp) protein (273aa)
ABC transporter
Methionine import ATP-binding protein MetN 1 n=79 Tax=Bacillus RepID=METN1_BACC1 (db=UNIREF evalue=1.8e-25 bit_score=122.1 identity=32.1 coverage=83.15018315018315)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=12 to=254 evalue=1.1e-79)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF16 from=12 to=254 evalue=1.1e-79)
AMDSBA4_51_6
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4237..5082
DNA (846bp) protein (282aa)
type 11 methyltransferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=13 to=258 evalue=1.1e-30)
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=38 to=207 evalue=1.1e-26)
(db=HMMPfam db_id=PF08241 from=54 to=153 evalue=1.1e-17 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
AMDSBA4_51_7
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5071..5931)
DNA (861bp) protein (287aa)
NAD-dependent epimerase/dehydratase
Predicted nucleoside-diphosphate-sugar epimerase n=1 Tax=Methylacidiphilum fumariolicum SolV RepID=I0K1C2_9BACT (db=UNIREF evalue=4.0e-31 bit_score=141.0 identity=35.9 coverage=73.5191637630662)
NAD(P)-binding Rossmann-fold domains (db=superfamily db_id=SSF51735 from=1 to=213 evalue=7.7e-46)
no description (db=Gene3D db_id=G3DSA:3.40.50.720 from=3 to=228 evalue=4.8e-35 interpro_id=IPR016040 interpro_description=NAD(P)-binding domain GO=Molecular Function: nucleotide binding (GO:0000166))
AMDSBA4_51_8
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6042..6710)
DNA (669bp) protein (223aa)
secretion protein HlyD family protein rbh
secretion protein HlyD family protein rbh
seg (db=Seg db_id=seg from=80 to=93)
seg (db=Seg db_id=seg from=6 to=25)
AMDSBA4_51_9
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6758..8314)
DNA (1557bp) protein (519aa)
EmrB/QacA subfamily drug resistance transporter rbh
EmrB/QacA subfamily drug resistance transporter rbh
Efflux protein QacA n=1 Tax=Streptomyces clavuligerus ATCC 27064 RepID=B5GMK8_STRC2 (db=UNIREF evalue=9.4e-39 bit_score=167.2 identity=25.9 coverage=94.79768786127167)
transmembrane_regions (db=TMHMM db_id=tmhmm from=294 to=316)
AMDSBA4_51_10
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8341..8964)
DNA (624bp) protein (208aa)
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXJ1_9FIRM (db=UNIREF evalue=3.3e-35 bit_score=154.1 identity=41.3 coverage=98.5576923076923)
seg (db=Seg db_id=seg from=84 to=104)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
AMDSBA4_51_11
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8964..9803)
DNA (840bp) protein (280aa)
hypothetical protein
Putative uncharacterized protein n=2 Tax=Sulfobacillus acidophilus RepID=G8TXJ0_9FIRM (db=UNIREF evalue=6.7e-15 bit_score=87.0 identity=27.8 coverage=68.92857142857143)
seg (db=Seg db_id=seg from=251 to=268)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
AMDSBA4_51_12
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9871..10296)
DNA (426bp) protein (142aa)
regulatory protein MarR
HTH_MARR_1 (db=PatternScan db_id=PS01117 from=62 to=96 evalue=0.0 interpro_id=IPR023187 interpro_description=Transcriptional regulator MarR-type, conserved site)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=5 to=136 evalue=1.3e-29)
no description (db=HMMSmart db_id=SM00347 from=23 to=123 evalue=1.5e-23 interpro_id=IPR000835 interpro_description=Transcription regulator HTH, MarR-type GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
AMDSBA4_51_13
unknown

Not on your lists

10639..11022
DNA (384bp) protein (128aa)
(db=HMMPfam db_id=PF01471 from=53 to=89 evalue=5.3e-07 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
PGBD-like (db=superfamily db_id=SSF47090 from=12 to=89 evalue=2.9e-06 interpro_id=IPR002477 interpro_description=Peptidoglycan binding-like GO=Biological Process: metabolic process (GO:0008152))
AMDSBA4_51_14
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11033..11944)
DNA (912bp) protein (304aa)
L-proline dehydrogenase (EC:1.5.99.8)
L-proline dehydrogenase (EC:1.5.99.8)
L-proline dehydrogenase n=2 Tax=Sulfobacillus acidophilus RepID=G8TXI8_9FIRM (db=UNIREF evalue=1.2e-115 bit_score=421.8 identity=68.3 coverage=99.3421052631579)
AMDSBA4_51_15
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11949..12716)
DNA (768bp) protein (256aa)
tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Pelobacter propionicus DSM 2379 RepID=TRUA_PELPD (db=UNIREF evalue=1.6e-23 bit_score=115.5 identity=33.5 coverage=92.96875)
seg (db=Seg db_id=seg from=34 to=50)
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=1 to=250 evalue=1.9e-54 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
AMDSBA4_51_16
unknown

Not on your lists

comp(12698..13399)
DNA (702bp) protein (234aa)
seg (db=Seg db_id=seg from=127 to=145)
seg (db=Seg db_id=seg from=54 to=71)
transmembrane_regions (db=TMHMM db_id=tmhmm from=126 to=145)
transmembrane_regions (db=TMHMM db_id=tmhmm from=91 to=113)
AMDSBA4_51_17
MPF_Thermotogae_50_1627, Thermotogales, Thermotogae, Thermotogae, Bacteria

Not on your lists

comp(13363..14127)
DNA (765bp) protein (255aa)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=5 to=172 evalue=7.2e-24)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=1 to=192 evalue=1.3e-28)
COBALT ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF22 from=5 to=172 evalue=7.2e-24)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=3 to=192 evalue=1.6e-23)
AMDSBA4_51_18
Geobacillus sp. JF8, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14103..14819)
DNA (717bp) protein (239aa)
cobalt ABC transporter ATP-binding protein
Sulfate-transporting ATPase n=5 Tax=Enterobacteriaceae RepID=G7LV70_9ENTR (db=UNIREF evalue=2.8e-14 bit_score=84.7 identity=30.0 coverage=89.1213389121339)
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=2 to=201 evalue=6.9e-42)
COBALT ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF22 from=2 to=201 evalue=6.9e-42)
AMDSBA4_51_19
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14874..15218)
DNA (345bp) protein (115aa)
50S ribosomal protein L17P
50S ribosomal protein L17 n=2 Tax=Sulfobacillus acidophilus RepID=G8TXI6_9FIRM (db=UNIREF evalue=1.6e-47 bit_score=194.1 identity=85.1 coverage=98.26086956521739)
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=4 to=114 evalue=1.6e-53 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L17: ribosomal protein L17 (db=HMMTigr db_id=TIGR00059 from=3 to=114 evalue=7.2e-53 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA4_51_20
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15265..16212)
DNA (948bp) protein (316aa)
rpoA; DNA-directed RNA polymerase subunit alpha
DNA-directed RNA polymerase subunit alpha n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=RPOA_ALKMQ (db=UNIREF evalue=9.0e-109 bit_score=399.1 identity=62.5 coverage=99.36708860759494)
seg (db=Seg db_id=seg from=109 to=122)
seg (db=Seg db_id=seg from=291 to=308)
AMDSBA4_51_21
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16268..16891)
DNA (624bp) protein (208aa)
30S ribosomal protein S4
30S ribosomal protein S4
30S ribosomal protein S4 A n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=RS4A_SYMTH (db=UNIREF evalue=5.9e-85 bit_score=319.3 identity=71.5 coverage=99.03846153846155)
AMDSBA4_51_22
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16917..17309)
DNA (393bp) protein (131aa)
30S ribosomal protein S11
30S ribosomal protein S11 n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=RS11_KORVE (db=UNIREF evalue=6.7e-42 bit_score=175.6 identity=64.2 coverage=93.12977099236642)
seg (db=Seg db_id=seg from=4 to=19)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=98 to=120 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
AMDSBA4_51_23
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17335..17706)
DNA (372bp) protein (124aa)
30S ribosomal protein S13
30S ribosomal protein S13, chloroplastic n=1 Tax=Cyanidioschyzon merolae RepID=RR13_CYAME (db=UNIREF evalue=1.3e-31 bit_score=141.4 identity=52.9 coverage=95.16129032258065)
seg (db=Seg db_id=seg from=50 to=60)
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=88 to=101 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA4_51_24
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18161..18916)
DNA (756bp) protein (252aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase 1 n=46 Tax=Mycobacterium tuberculosis complex RepID=AMPM1_MYCTU (db=UNIREF evalue=2.2e-57 bit_score=228.0 identity=48.0 coverage=97.61904761904762)
seg (db=Seg db_id=seg from=42 to=54)
PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P) (db=HMMPanther db_id=PTHR10804 from=54 to=250 evalue=1.4e-84)
AMDSBA4_51_25
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18909..19571)
DNA (663bp) protein (221aa)
adk; adenylate kinase
Adenylate kinase n=1 Tax=Mycoplasma pulmonis UAB CTIP RepID=KAD_MYCPU (db=UNIREF evalue=1.1e-31 bit_score=142.5 identity=32.7 coverage=94.57013574660633)
seg (db=Seg db_id=seg from=117 to=131)
ADENYLATE_KINASE (db=PatternScan db_id=PS00113 from=83 to=94 evalue=0.0 interpro_id=IPR000850 interpro_description=Adenylate kinase GO=Molecular Function: ATP binding (GO:0005524), Biological Process: nucleobase-containing compound metabolic process (GO:0006139), Molecular Function: nucleobase-containing compound kinase activity (GO:0019205))
AMDSBA4_51_26
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19568..20848)
DNA (1281bp) protein (427aa)
preprotein translocase subunit SecY
preprotein translocase subunit SecY
Protein translocase subunit SecY n=2 Tax=Sulfobacillus acidophilus RepID=G8TXH7_9FIRM (db=UNIREF evalue=3.8e-195 bit_score=686.4 identity=79.6 coverage=98.12646370023418)
transmembrane_regions (db=TMHMM db_id=tmhmm from=206 to=228)
AMDSBA4_51_27
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(20865..21302)
DNA (438bp) protein (146aa)
50S ribosomal protein L15
50S ribosomal protein L15 n=12 Tax=Microcystis RepID=RL15_MICAN (db=UNIREF evalue=2.0e-26 bit_score=124.4 identity=47.7 coverage=98.63013698630137)
seg (db=Seg db_id=seg from=11 to=34)
rplO_bact: ribosomal protein L15 (db=HMMTigr db_id=TIGR01071 from=2 to=143 evalue=2.6e-67 interpro_id=IPR005749 interpro_description=Ribosomal protein L15, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
AMDSBA4_51_28
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21299..21499)
DNA (201bp) protein (67aa)
Ribosomal protein L30p (db=HMMPIR db_id=PIRSF002211 from=1 to=60 evalue=8.1e-32 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
rpmD_bact: ribosomal protein L30 (db=HMMTigr db_id=TIGR01308 from=4 to=58 evalue=2.5e-29 interpro_id=IPR005996 interpro_description=Ribosomal protein L30, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: large ribosomal subunit (GO:0015934))
Ribosomal protein L30p/L7e (db=superfamily db_id=SSF55129 from=1 to=60 evalue=8.7e-20 interpro_id=IPR016082 interpro_description=Ribosomal protein L30, ferredoxin-like fold domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00327 from=3 to=54 evalue=6.1e-19 interpro_id=IPR016082 interpro_description=Ribosomal protein L30, ferredoxin-like fold domain GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
AMDSBA4_51_29
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21492..22022)
DNA (531bp) protein (177aa)
30S ribosomal protein S5
30S ribosomal protein S5 n=5 Tax=Arthrobacter RepID=RS5_ARTS2 (db=UNIREF evalue=4.2e-47 bit_score=193.4 identity=57.2 coverage=93.78531073446328)
RIBOSOMAL_S5 (db=PatternScan db_id=PS00585 from=33 to=65 evalue=0.0 interpro_id=IPR018192 interpro_description=Ribosomal protein S5, N-terminal, conserved site)
rpsE_bact: ribosomal protein S5 (db=HMMTigr db_id=TIGR01021 from=13 to=168 evalue=4.7e-93 interpro_id=IPR005712 interpro_description=Ribosomal protein S5, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
AMDSBA4_51_30
Sulfobacillus acidophilus, Sulfobacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(22039..22404)
DNA (366bp) protein (122aa)
rplR; 50S ribosomal protein L18
50S ribosomal protein L18 n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RL18_CARHZ (db=UNIREF evalue=3.5e-37 bit_score=159.8 identity=66.1 coverage=98.36065573770492)
L18_bact: ribosomal protein L18 (db=HMMTigr db_id=TIGR00060 from=7 to=121 evalue=8.9e-54 interpro_id=IPR004389 interpro_description=Ribosomal protein L18, bacterial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
(db=HMMPfam db_id=PF00861 from=7 to=121 evalue=1.9e-38 interpro_id=IPR005484 interpro_description=Ribosomal protein L18/L5 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Displaying items 1-30 of 40 in total

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