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AMDSBA4_66_3 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
34.1 208.0 100 6.20e-19 aac:Aaci_3088
RNA polymerase sigma factor, sigma-70 family n=4 Tax=Clostridiales RepID=D4N1B5_9FIRM (db=UNIREF evalue=1.2e-15 bit_score=89.4 identity=30.3 coverage=77.04918032786885) similarity UNIREF
DB: UNIREF
30.3 77.05 89 1.20e-15 aac:Aaci_3088
seg (db=Seg db_id=seg from=84 to=97) iprscan interpro
DB: Seg
null null null null aac:Aaci_3088
coiled-coil (db=Coil db_id=coil from=97 to=118 evalue=NA) iprscan interpro
DB: Coil
null null null null aac:Aaci_3088
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=33 to=218 evalue=7.3e-15 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 7.30e-15 aac:Aaci_3088
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=150 to=215 evalue=4.4e-08 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: iprscan interpro
DB: superfamily
null null null 4.40e-08 aac:Aaci_3088
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=12 to=127 evalue=7.2e-08 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 7.20e-08 aac:Aaci_3088
(db=HMMPfam db_id=PF00196 from=171 to=213 evalue=2.8e-05 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565)) iprscan interpro
DB: HMMPfam
null null null 2.80e-05 aac:Aaci_3088
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WYJ0_ALIAD similarity UNIREF
DB: UNIREF90
34.1 null 100 9.00e-19 aac:Aaci_3088
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACV60084.1}; TaxID=521098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicycl UNIPROT
DB: UniProtKB
34.1 208.0 100 3.10e-18 C8WYJ0_ALIAD