ggKbase home page

AMDSBA4_66_15 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
seg (db=Seg db_id=seg from=11 to=20) iprscan interpro
DB: Seg
null null null null has:Halsa_0457
seg (db=Seg db_id=seg from=162 to=176) iprscan interpro
DB: Seg
null null null null has:Halsa_0457
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=42 to=219 evalue=9.2e-17 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 9.20e-17 has:Halsa_0457
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=21 to=137 evalue=4.0e-13 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 4.00e-13 has:Halsa_0457
(db=HMMPfam db_id=PF04542 from=47 to=118 evalue=3.1e-08 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 3.10e-08 has:Halsa_0457
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=130 to=230 evalue=2.0e-06 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 2.00e-06 has:Halsa_0457
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=31 to=121 evalue=0.00012) iprscan interpro
DB: Gene3D
null null null 1.20e-04 has:Halsa_0457
RNA polymerase factor sigma-70 {ECO:0000313|EMBL:EUJ40845.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EUJ40845.1};; TaxID=1265861 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Brochothrix.;" UNIPROT
DB: UniProtKB
36.7 188.0 100 3.90e-18 W7CW07_9LIST
RNA polymerase sigma-H factor n=1 Tax=Megasphaera micronuciformis F0359 RepID=E2ZCP2_9FIRM similarity UNIREF
DB: UNIREF90
29.2 null 90 9.00e-16 has:Halsa_0457
ECF subfamily RNA polymerase sigma-24 subunit KEGG
DB: KEGG
29.5 190.0 87 5.20e-15 has:Halsa_0457